Axyl024030.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387371.1:1433166-1434389[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 6.7e-05 0.0048 18.0 2.4 1 23 48 71 48 71 0.95 2 9 4.6e-05 0.0034 18.5 2.5 2 23 79 101 78 101 0.95 3 9 0.00015 0.011 16.9 1.0 2 23 139 161 138 161 0.96 4 9 0.0005 0.036 15.3 5.8 1 23 168 191 168 191 0.98 5 9 0.0018 0.13 13.5 5.3 1 23 197 220 197 220 0.94 6 9 2.9e-05 0.0021 19.2 0.4 2 23 228 249 227 249 0.97 7 9 0.00066 0.048 14.9 1.9 2 23 257 279 256 279 0.96 8 9 0.0001 0.0075 17.4 3.2 2 23 288 310 287 310 0.94 9 9 5.5e-05 0.004 18.3 4.4 1 23 320 342 320 342 0.98
Sequence Information
- Coding Sequence
- ATGGAGGCGAAGCCGGAGCCTGGACACGACATGAAGTATATAAGCGTTACCAGCTCCGAGCTGACCGACGAGCAGCGGGAGATGTATGAGTCCGTCCTCACGACGTGGAAACCCATGATGTTCCAACAACCAGCCAAGCGCTACATATGCCCCGAATGCCACAAGGAATTCAAAAACTACCAAAACCTATACCTCCACACGACCAGAGTCCACTCAACCCAAGACTCCGCCGTCGTCTGCGATGTATGCGACAAAACCTTCAAGAACAAACATTATCTATACATGCACAGAATGAACAAGCATTACTCAGAAGACGAGAAATGCTGCTGTCAATTTTGCATGCAAGAATTCCGGACACGACGAGCGTTGCACATGCATGTGAAACGTTACCACCCAACAGCAATACCCGAGATCAAATGCGAGATTTGCGATAAAACCTTCGCGATACCCTGCAAATTGAGATACCACATGGAGTCCTATCACAGAGAAGATAAGGAGAAATACAAGTGCCACATGTGTCAGAAACTCTATAAGAACCATTTGAACTTGGCGCGGCATCTGAACACCCAGCATTCTGAAGTAGAACGTCATCCCTGCGTGTTCTGCCCAATGACGTTCAAATCGCGTCATCACATGAAACGACACATTTTAAACATACATCCGCCATTGGAATCTAAAGTATCCTGCCCGGAATGTTCTAGAGAGTTCAAAAACGACAAGTACTTAAAAGACCACATGCAGATTCACTCGTCTTTGGACACTAAAGTGAAATGCGATATATGCGACAAGTTCTTTCACTCGGCCATCCGCTTAAAGAAGCATAAGAAGATAGTTCACCCTGAACCTGATAAACCGAAGATACGGTGCGAAAAGTGTGACAAGGAGTTCGTCCACGCGCATTATTTGAGGAGACACAATAACTCCGTGCACGTGGAAGTAGATGAAACTGAATACCAGCATGAATGTAACCAGTGCGGAAAGAAATTCAAGATTAGGAAGTATCTGAACAACCATTTGCAACGGCACGAGCAGCAACATCTGAAGCAGATGTCGCTTGTTGTGAAAACTGTTATGGGGGAAGATGGGAAGGAGATAGAAGTGCCAGTGCCGAAGACGAGGGGGAGGAAGCCTAAGCAGCCTCCTGCAGCCATCGAGTTTATTAAATGCGAACCACAGACTAGTTCGGAGTCAGGATCTGACGAGACTGACTCTGAGTCCGATTAA
- Protein Sequence
- MEAKPEPGHDMKYISVTSSELTDEQREMYESVLTTWKPMMFQQPAKRYICPECHKEFKNYQNLYLHTTRVHSTQDSAVVCDVCDKTFKNKHYLYMHRMNKHYSEDEKCCCQFCMQEFRTRRALHMHVKRYHPTAIPEIKCEICDKTFAIPCKLRYHMESYHREDKEKYKCHMCQKLYKNHLNLARHLNTQHSEVERHPCVFCPMTFKSRHHMKRHILNIHPPLESKVSCPECSREFKNDKYLKDHMQIHSSLDTKVKCDICDKFFHSAIRLKKHKKIVHPEPDKPKIRCEKCDKEFVHAHYLRRHNNSVHVEVDETEYQHECNQCGKKFKIRKYLNNHLQRHEQQHLKQMSLVVKTVMGEDGKEIEVPVPKTRGRKPKQPPAAIEFIKCEPQTSSESGSDETDSESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00149766;
- 90% Identity
- iTF_00342550;
- 80% Identity
- -