Atur022562.2
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905147355.1
- Location
- LR990288.1:24437599-24453709[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-75 3.7e-71 241.5 20.3 1 260 124 375 124 404 0.89 2 2 0.18 5.4e+03 -1.9 8.6 119 166 421 468 407 477 0.44
Sequence Information
- Coding Sequence
- ATGACGCAAATCATGGGCCACCAGTCTAAAAGCGTTACACCTGACAATAGCGACGAAGAGAGCGGTGAAGCGTTCACCGACGCAGACTTCGACGACTTTGACGAACTGGACGTAGACGTAGAGCGTAGCGATGAATCCAAACCATCCCCCGCCCCTATTAACGAGACTGTTAACCCGGAGCTCACAGAAGTCATGGAGATCGCTCACGGCGCCCGGAATGGTTTCGATGAACACGATCATACTAAAGTTAACGGGCTCAAGAACGGCGACAGCGAGGAATGTCGCAGCGCGTTGCCCGACGTCCGGCGCGACTCGCACGGCGACCAGAACCCCTCCATCGTCGGCATTCTCGGCGGACAACAGGATCACGCGGAACAGCGTCtagcggcgcggcgggcggcgcgggcggagGCGCGGGAGATCCGCATGCGAGAGCTCGAGCGACAGCAGCGCGAGCAGGAGGACCATGCGGACAAGGCCTACGACATGTATGCCGAGACGGTGGGGCGGCGGGCGGGCCCCCGGCTGACGGGGCTGAGCCCGGCGCTGCACTCGCCGCGCCGCAGCTCCGAGGACTCCGCCGATGACACCTTCAATGTCAAAGATCTCCGGCACGAGTTGAAAGAAGTAGAAGAGAAGTTCCGGAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCAGCACTCGGTTACCAGCTCGAGCTGCTGAAGGACCGTATCGAGGAACTCCATGAAGAATACGCACAGCTACAGCGcgagcacaaagaaaaatgctcAGCCCACGAGCGCCTAAAGCGCGAGCACGTGTCCCTGGAGCGCGAGCTGGGCGCGGCGCGGGACGCGGTGCGTGCGCGCGACGCCGCCGCCTGCGACGCCGGCTTCGCGTTCGTggacgccgcgcccgccgccaacGGCGGGGAcgccgcgcccgcgctgccgccgctCGCGCTCGTCTCGCACCAGAACGAGAAGCTGCTTAACGACGCGGGAGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTTTTAAGTTCGAAGCAGTCGCTGGAGGGCGAGGTGCGGCGCCTCAAGCTGCAGCTCAACGAGGAGCGGCACAACGGCGTCGCGCGCATCGACCAGGATCTGGAGTCCGAACTGGAAGCGCTGCGCAAGTCGTGCGCGGAAGCGAAagcgcgtgcggcgcgcgccGAGGCGGAGGCGGCGCTGcaggcggcgggcgcggcgcggctCGCGGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCGCGCGACGACGCAGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGAGGGAGGCGCGGGAAGCGCTGAACCGCGTGGAGGAGCTGGAGACGGAGAACAGCCACCTCACGAAGCGGCTCGACAAGCTCAAGAACGCCAAGTCCGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MTQIMGHQSKSVTPDNSDEESGEAFTDADFDDFDELDVDVERSDESKPSPAPINETVNPELTEVMEIAHGARNGFDEHDHTKVNGLKNGDSEECRSALPDVRRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGPRLTGLSPALHSPRRSSEDSADDTFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHVSLERELGAARDAVRARDAAACDAGFAFVDAAPAANGGDAAPALPPLALVSHQNEKLLNDAGEGTLDVRLQKLLSSKQSLEGEVRRLKLQLNEERHNGVARIDQDLESELEALRKSCAEAKARAARAEAEAALQAAGAARLAAQLQRLKAQADARDDAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_00772899;
- 80% Identity
- -