Atur047298.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990303.1:2066940-2067623[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-05 0.025 16.0 0.0 10 32 5 27 4 36 0.91 2 2 3.8e-06 0.0043 18.4 0.0 10 32 70 92 61 101 0.87
Sequence Information
- Coding Sequence
- ATGCAGTGCTTTGAGGCTGTCAAGAGTGGCACCATGACCGTCCCGGAGGCTTCGGCTTACTATGGAGTGCCCCAGAAGACTGTAGCTGCTAAGATACTGAGCGATAAACGAGGAGGTGAGTACAGCTACTTAGTTGAGCGACAGCACCTACAAGAACTACACCACACCTACAAGAACTACACCAGTGATGAGCTGATGCAGTGCTTCGAGGCTGTCAAGAGTGGCACCATGACCGTCCCGGAGGCTTCGGCTTACTATGGAGTGCCCCGGAAGACTGTAGCTGCTAAGATACTGAGCGATAAACGAGGAGGTGAGTACAGCTTAGTTGAGCGACAGCACCTACAAGAACTACACCAGTGA
- Protein Sequence
- MQCFEAVKSGTMTVPEASAYYGVPQKTVAAKILSDKRGGEYSYLVERQHLQELHHTYKNYTSDELMQCFEAVKSGTMTVPEASAYYGVPRKTVAAKILSDKRGGEYSLVERQHLQELHQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00149328; iTF_00148411;
- 90% Identity
- iTF_00149328;
- 80% Identity
- -