Atur047297.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990303.1:2065752-2066407[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.002 2.3 9.6 0.0 17 32 1 16 1 25 0.87 2 2 5.2e-06 0.006 17.9 0.0 10 32 58 80 57 89 0.91
Sequence Information
- Coding Sequence
- ATGACCGTCCCGGAGGCTTCGGCTTACTATGGAGTGCCCCGGAAGACTGTAGCTGCTAAGATACTGAGCGATAAACGAGGAGGTGAGTACAGCTTAGTTGAGCGACAGCACCTACAAGAACTACACCACACCTACAAGAACTACACCATTAATGAGCTGATGCAGTGCTTTGAGGCTGTCAAGAGTGGCACCATGACCGTCCCGGAGGCTTCGGCTTACTATGGAGTGCCCCGGAAGACTGTAGCTGCTAAGATACTGAGCGATAAACGAGGAGGTGAGTACAGCTACTTAGTTGAGCAACAGCACCTACAAGAACTACACCAGTGA
- Protein Sequence
- MTVPEASAYYGVPRKTVAAKILSDKRGGEYSLVERQHLQELHHTYKNYTINELMQCFEAVKSGTMTVPEASAYYGVPRKTVAAKILSDKRGGEYSYLVEQQHLQELHQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00149313;
- 90% Identity
- iTF_00149313;
- 80% Identity
- -