Atur023989.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- foxc1b
- Assembly
- GCA_905147355.1
- Location
- LR990289.1:12293317-12294276[+]
Transcription Factor Domain
- TF Family
- Fork_head
- Domain
- Fork_head domain
- PFAM
- PF00250
- TF Group
- Helix-turn-helix
- Description
- The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-36 7.4e-33 114.2 0.0 2 87 75 157 74 158 0.96
Sequence Information
- Coding Sequence
- ATGTGTAGCGGAGCCGAGGGAGGCCCCTGGCCGCTTAAGGACGCGCCGACCGTCACCGCCGCGGCCCTCGACCACTATCGACTCCAACTCTACAACTACGCCGTCGCCGAACGACTTCGCCTCTACCCACCAAGCGTCGCACCATGCTACGCTCCCTACGCACCTCGCTTGGCACTCTCCATGTCTCTCCTCCAACACCGTGCGCTCCAACCGGAAGAACCCAAACCCCAACACAGCTACATCGGCCTCATCGCCATGGCCATTCTCAGCTCGCCGGACCGCAAACTCGTCCTCTCAGACATCTACCAGCACATCCTGGACAACTACCCGTACTTCCGCTCCCGGGGCCCCGGTTGGCGGAACTCCATCCGGCACAATCTATCACTCAACGACTGCTTCGTCAAAGCCGGGAGATCGGCCAACGGAAAGGGACACTACTGGGCGATCCATCCGGCGAACGTGGAGGACTTTAGAAAAGGCGATTTCCGAAGACGCAAAGCGCAGAGGAAAGTGAGGAAGCATATGGGATTGGCCGTGGACGATGATGGAGAGGATTCCCCGTCACCGCCACCGCAGTCACCGCCACCGACGACGCTGGCGTTGCCGTTTTGGGGAGCGGCGCGGCTGCCGGGCGGTGGGCAACCGAGGAAACGGCAGTTCGACGTCGCCTCGCTGCTGGCTCCGGACGACGCGCCGGAGAAACGTGCGCGCCGCGACAGCAGCGGGGAAGAAGAAGTCGAAGAGGATATCGACGTGGTGGCCAGCGATCAGGAGGAGCGCGGGCCCGACGGCGAGGAGGAGCGCGGGTGCTCGCTGGCGGCGCCGACGCCCTACCCGCTGCTGGGCGGCTGGTGGCCGGCGCTGGAGCCCGCCCTGCTGCAGCAGCTGCGCCGCCACGCCGCGTCACCCGCGCCCCAGCCGCCCAGCCCGGCCCACCCCCAGCGGCCGCCGGACACCTAG
- Protein Sequence
- MCSGAEGGPWPLKDAPTVTAAALDHYRLQLYNYAVAERLRLYPPSVAPCYAPYAPRLALSMSLLQHRALQPEEPKPQHSYIGLIAMAILSSPDRKLVLSDIYQHILDNYPYFRSRGPGWRNSIRHNLSLNDCFVKAGRSANGKGHYWAIHPANVEDFRKGDFRRRKAQRKVRKHMGLAVDDDGEDSPSPPPQSPPPTTLALPFWGAARLPGGGQPRKRQFDVASLLAPDDAPEKRARRDSSGEEEVEEDIDVVASDQEERGPDGEEERGCSLAAPTPYPLLGGWWPALEPALLQQLRRHAASPAPQPPSPAHPQRPPDT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00172548;
- 90% Identity
- iTF_00148303; iTF_00772693; iTF_01245753; iTF_01133539; iTF_00411237; iTF_01072267; iTF_00656961; iTF_00289444; iTF_00654053; iTF_00655911; iTF_00659281; iTF_00658176; iTF_00871116; iTF_00412339; iTF_00409104; iTF_00410098; iTF_00680340; iTF_00660126;
- 80% Identity
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