Acap028516.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947623375.1
- Location
- OX392506.1:3424189-3437200[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-75 7.7e-71 239.8 21.0 1 261 120 376 120 406 0.88 2 2 1 3.7e+04 -5.9 14.9 115 169 410 464 371 477 0.60
Sequence Information
- Coding Sequence
- ATGGGCCACCAGTCTAAAAGCGCAACACCTGACAATAGCGACGAAGAGAGCGGTGAAGCGTTCACCGACGCAGACTTCGACGACTTTGACGAACTGGACGTAGACGTAGAGCGTAGCGATGAATCCAAACCATCCCCCGCCCCTATTAACGAGACTGTTAACCCGGAGCTCACAGAAGTCATGGAGATCGCTCACGGCGCCCGGAATGGTTTCGATGAACACGATCATACTAAAGTTAACGGGCTCAAGAACGGCGACAGCGAGGAATGTCGCAGCGCGTTGCCTGACGTCCGGCGCGACTCGCACGGCGACCAGAACCCCTCCATCGTCGGCATTCTCGGCGGACAACAAGATCACGCGGAACAGCGTCTAGCGGCGCGGCGGGCGGCGCGGGCGGAGGCGCGGGAGATCCGCATGCGCGAGCTCGAGCGACAGCAGCGCGAGCAGGAGGACCATGCGGACAAGGCCTACGACATGTATGCCGAGACGGTGGGGCGGCGGGCGGGCACCCGGCTGACGGGGCTGGGCCCGGCGCTGCACTCGCCGCGCCGGAGCTCCGAGGACTCCGCCGATGACACCTTCAATGTCAAAGATCTCCGGCACGAGTTGAAAGAAGTAGAAGAGAAGTTCCGGAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCAGCACTCGGTTACCAGCTCGAGCTGCTGAAGGACCGCATCGAGGAACTCCATGAAGAATACGCACAGCTACAGCGCGAGCACAAAGAAAAATGCTCAGCCCACGAGCGTCTAAAACGCGAGCACGTGTCCCTGGAGCGCGAGCTGGGCGCGGCGCGGGACGCGGTGCGCGCGCGCGACGCCGCCGCCGGCGACGCCGGCTTCGCCTTCGTGGACGCCGCGCCCGCCGCCGCCGCCGCCGCCAACGGCGGGGACAACGCGCCCGCGCTGCCGCCGCTCGCGCTTGTCTCGCACCAGAACGAGAAGCTGCTTAACGACGCGGGGGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTTTTAAGTTCGAAGCAGTCGCTGGAGGGCGAGGTGCGGCGCCTCAAGCTGCAGCTCAACGAGGAGCGGCACAACGGCGTCGCGCGCATCGACCAGGACCTCGAGTCCGAACTGGAAGCGCTGCGCAAGTCGTGCGCGGAAGCGAAAGCGCGTGCGGCGCGCGCCGAGGCGGAGGCGGCGCTGCAGGCGGCGGGCGCGGCGCGGCTCGCGGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCGCGCGACGAGGCAGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGAGGGAGGCGCGGGAAGCGCTGAACCGTGTGGAGGAGCTGGAGACGGAGAACAGCCACCTCACGAAGCGGCTCGACAAGCTCAAGAACGCCAAGTCCGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MGHQSKSATPDNSDEESGEAFTDADFDDFDELDVDVERSDESKPSPAPINETVNPELTEVMEIAHGARNGFDEHDHTKVNGLKNGDSEECRSALPDVRRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGTRLTGLGPALHSPRRSSEDSADDTFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHVSLERELGAARDAVRARDAAAGDAGFAFVDAAPAAAAAANGGDNAPALPPLALVSHQNEKLLNDAGEGTLDVRLQKLLSSKQSLEGEVRRLKLQLNEERHNGVARIDQDLESELEALRKSCAEAKARAARAEAEAALQAAGAARLAAQLQRLKAQADARDEAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_00772899;
- 80% Identity
- -