Abis004806.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000015.1:1550946-1583861[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.5e-15 2.3e-11 43.6 0.0 7 70 260 321 256 325 0.87
Sequence Information
- Coding Sequence
- ATGTCGGAGGAAATGGCGATTGGTGATAACGCTACTAACGAAGAAGCTAAGTTGAACGGCGATGAGGCGTCGGCTGCGAGCGCGGTTGACGCTGACGCGGCCGCTCAAGCTGATCCGGAGCCCCAGACCGAGCCCGAAGCGCCTCCGGTAGAGGATGCGCCAGTTCTGGCAGAAGAAGTACCAGaagtaaaagaagaaaaaactgAAAATGCCGCAGATATTGATATTGCCGAGCCTGAACAACCTACAGACAAGCTTGTCGCAGGAGATGTACTTGACGAGGGGGAAGAGAAGAGGGGCATCAAGCGGAGAGCATCTGCAGCCTTCAGTGATGCTGGAAAAGAGGACTTTAAAGGCTTTGACACTGTGGATAAGAATGAATTTGAATCATCGTACAGTGAAGTGTACAGTCGGATTGTTGATCGACTGGAAGCGGAAGTGACAGCGGCCGTCAAGGACCTCACACCACTCCGCTCCGTGATGGCCACTCCACCAGCTCCGGCACGAGCCAGCAAACGCCCGCGACAGGACACCGGTGAGAACCTAGCGTTAGATCCACTTGCCAGGGAACTCTCCGAAGCGGTGAAAGATTTGAATATGAGTGCTACCCTTAAAAAACGTCCGTCGCGGGCGTTGGATACGGATGGATCAAGGCCTTCGTCAGCCTTATCGTCAAGGTCTGATGGTGATGGAGTCATCTCTACtgatGCGACAAGCGCCGCATCGTCGCCCTTGCACCGCGGCCGCCGGGCCACGACCGAGATGTCGTCCCCGCTGCTGCGCGCGCCGCTCGAGCGCGGCTGGCGGCGGGAGCTAGTGTACCGCGCCGCGCTCGACTCGCACTCGCGCCGGAACGCCGATATATACTACTACACGCCCGCCGGGAGGAAGCTGAGGTCTACCAGAGAGGTAGCTGAACATTTGTCCGGTACTGGACTGACATTGGAGAATTTCTCATTCTTCAAAGAACCACTAGGAATAGACGATCCTGAGAAGGAGATTATacgTGACGCCAAGCTGATGCGGCGCGTGGAGTCCCCGGTGGCGGCGCCCCCGGCGGAGGGCAAGCGCGCCCCGAAGCCCCGCGCCCCCAAGGGCGCCAGCCCCGAGCGCCCCGCACCTGCCACTGTCAAATCTCCACCCGCTAAAATTAGGGTAAAGTCAGTAGGCTCCAGACTAAGCACAAACTCCCCATCCACCCCGGCCACCAACACCAAACAACAGAAGAAAACGGCAACAACGGACAACAACAACTCGGCCGCTTGGAAGAAACCCAGACCGCCGCTGGTTACGCCGGCCGCTACGCCGGCTGCTACGCCGGTTGCTACGCCGGTTGCTACGCCGAGGCTGACGCCACCTAGAGCCGTTACTCCGCCTCAGCCTCCGCCTCCGCTACAAAGCCGGCCACCGCCTTCGCCTGACGTCACGTCTCCACGCCAACTAGTACAGCCGTGCTCAATGACATGCGGCCTCGGACTGCCGACAGTGGCCTGCGCTGCTTGCTTGTGCCTGTACCACCCAAAGTGTATCGGGCACAACTATACAGCCACTGGCCGCGTGCTGTGCAAGAACTGCCGCTCGTCGCCCCCTCCCATCGAGCCCCCTCCACTGACCCATAAGTCGGGCATTAGCGTGTCCAGTCTGCCCGCGCCAGTGCCCAGGCGAGTGCCCGTGCCAGTGCCAGTGCCCGTTCCAGTACCCAAGGGCACGCGTCCGTCTGATAAACGGGTCACTTTGAGGATGAAGgtGGCGGACGGCGGCGCACACGGCGAGCGCGTGTGGGCAgtggcgccgccgccgccgcgcgcggTGGTGCTGCGCGCGCAGCTGCCGCAGTCCGTGGCCACGCTGCACGGGCGGCGGTTCATTGTCGTGCCGAGGGACATCCGCCCAAACAATGAGGACAAGAAACGCGGTCGAGTTGCGAACGGCGCCGCTTCACCACCAGCTGTGCTCACTTCCCCCAGAAGGAGAGGGCGGCCAAAAATAGACGACACTGATCATTTCACCGCCTTCTATAACACTGCGCAGGAGAGGAACTATAATGTTGTTGTAcagATCTTCCAATATTTGGGCATGCGTGACTTGGCGCACTCGGCGCGCGTTTGCAAGCTGTGGCGGCAACTGGCAGCCACGCCCGCGCTATGGAGACACGTGCGGATGAAAAACTCACACgttAGTGACTGGGGCGGATTGTGTGCAGCTCTGAAGCGACACGGCACCAAACGACTGGATTTACGTAAAATGCTATTGCCACAAAACGACGCCACATTTTGGGACCAGTTCGCGCATCACATAGGCGAAGTGGAATCTTTAGAAAGGATAGAAATGTGCCGCTGTCCAGCGCGCGCAGTAGAAGCAGTATGCGCGAGTTTACCGTCCCTGAGAGCGTTATCAGCGCTCGCTATAAGAGACGCCAGATTGGATCCTGAACCTCTAGCACGTCTGACCTTACTACACGAACTACGCCTGAAGAGCATGGCCGGGTTGACTCTAACTAGGGACCTACGGCCGCTGGCGAGACTGACTGCGTTGCAACATCTCTCCCTTACTTCGATAAAGGACCTCGGCTGGTGTCTCTGCGACGTGGTGGGGCGGCTGCCGCAGCTGGAGACATTGGAGCTGGGCGAGTGCACGTTCCGGGCGGAGTTCGCGTCCACCCTGCGCGGCCTCACGCGGCTGCGGCGCCTGCGCCTCGAGCGGGGCACCGCGCACTGCGCCGCGCCCGCCCTCCTGCGGGCGCTGGCGCAGCTGCCGCGGCTGTGCGCCATCGAGCTGGTCAACATCGATGTCaagGTGGGTTTCGACGACGCGCTGGCGGAGTGCAAGAACATCCAGCGGCTGCTGATCATACCCACGTACGTGTCCCAGTCAGCCACCACCAATAAACAGGTATTAAGCGGCGTGCTCCGACTGAAAGACACACTGACGCATTTAATGTGGGGCGTCACGATCGAACTGCTCAGAGTGACGGAGCTGTTCATAGACCAGTGCGAACAGGGCGGCGATAAGAAGAGGGATGTCGGCGAGTGCATCCCCGTGCTGAAACCGGTGCCCGGCTGCCGGCTGCCGGACGAGCATCAGCATGTGGCCGGACCGCCGCAgGTGGAGATCCTGCCGCTGCCGACGTTGCAGCGGCTGCTGTCGGCGCAGCTGCCGCACACCAAGCTCAAGCTGCTGCGGATCCCCTTCCACGCCACCTGGCGGCAGTCGCTGGCCGACTTCCAGTAG
- Protein Sequence
- MSEEMAIGDNATNEEAKLNGDEASAASAVDADAAAQADPEPQTEPEAPPVEDAPVLAEEVPEVKEEKTENAADIDIAEPEQPTDKLVAGDVLDEGEEKRGIKRRASAAFSDAGKEDFKGFDTVDKNEFESSYSEVYSRIVDRLEAEVTAAVKDLTPLRSVMATPPAPARASKRPRQDTGENLALDPLARELSEAVKDLNMSATLKKRPSRALDTDGSRPSSALSSRSDGDGVISTDATSAASSPLHRGRRATTEMSSPLLRAPLERGWRRELVYRAALDSHSRRNADIYYYTPAGRKLRSTREVAEHLSGTGLTLENFSFFKEPLGIDDPEKEIIRDAKLMRRVESPVAAPPAEGKRAPKPRAPKGASPERPAPATVKSPPAKIRVKSVGSRLSTNSPSTPATNTKQQKKTATTDNNNSAAWKKPRPPLVTPAATPAATPVATPVATPRLTPPRAVTPPQPPPPLQSRPPPSPDVTSPRQLVQPCSMTCGLGLPTVACAACLCLYHPKCIGHNYTATGRVLCKNCRSSPPPIEPPPLTHKSGISVSSLPAPVPRRVPVPVPVPVPVPKGTRPSDKRVTLRMKVADGGAHGERVWAVAPPPPRAVVLRAQLPQSVATLHGRRFIVVPRDIRPNNEDKKRGRVANGAASPPAVLTSPRRRGRPKIDDTDHFTAFYNTAQERNYNVVVQIFQYLGMRDLAHSARVCKLWRQLAATPALWRHVRMKNSHVSDWGGLCAALKRHGTKRLDLRKMLLPQNDATFWDQFAHHIGEVESLERIEMCRCPARAVEAVCASLPSLRALSALAIRDARLDPEPLARLTLLHELRLKSMAGLTLTRDLRPLARLTALQHLSLTSIKDLGWCLCDVVGRLPQLETLELGECTFRAEFASTLRGLTRLRRLRLERGTAHCAAPALLRALAQLPRLCAIELVNIDVKVGFDDALAECKNIQRLLIIPTYVSQSATTNKQVLSGVLRLKDTLTHLMWGVTIELLRVTELFIDQCEQGGDKKRDVGECIPVLKPVPGCRLPDEHQHVAGPPQVEILPLPTLQRLLSAQLPHTKLKLLRIPFHATWRQSLADFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00013044; iTF_00012007; iTF_01302360; iTF_00720312;
- 90% Identity
- -
- 80% Identity
- -