Abis020000.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000137.1:235965-240561[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-10 2.1e-07 31.0 0.0 2 36 18 52 17 59 0.88
Sequence Information
- Coding Sequence
- ATGGGACGGTATCGAAAGAAAATTGGGTCACGGCCATACCGTAACTACTCCAATGAAGCGGTTGAAAACGCAGTGGCTTCGGTGCGGAAAGGTATGTCGATCAGAAAAGCTGCAGAAAAATATAGTGTTCCACCAGCAACTGTACAGAGAAAAGTATGTTGTAAGCATATGAAGAAAGTTGGAAGACCCACAGTTTTTTCAATTGAAgatgaaaatataattgttgAAGCCTTAATTCTTTGCGGGAAATGGGGATTTCCTATAACAGCTTTTGACTTAACGCTTATTGTGAAGCACTACCTTGACACAAAGGGAAAGACTGAACCTAGATTTAAGAATAATTTGCCAGGCAGATTCTGGCTGAAAGGATTTTTAGACCGAAACAAACATGAAATTTCATACAAGTTTTGTGAAAACATTAAAAGAGCAAGAGCTGCAGTTAATCCTGAAATGATATCAGATTATTTTGATAATCTGATGATTAGCTTGGAGGGAGTAAGACCAGAAGCAATTgtgaattttgatgaaactaactTTACCGACGATCCTGGGAAAACAAAAGTATTAGTAAGAAGAGGTTTCAAAAGTCCAAAAAATATCATTGATGCTTCCAAGTCTAGCACATCGGTTATGTTTGCAGGATCAGCATCAGGAGTTTTATTACCAATTTACGTGGTATATAAAGCTGAGCACCTTTACGATTCTTGGTTAACAGGAGGGCCAGCTAATACATTATATAATCGAACAAGAAGCGGTTGGTTTGACAGCACAACGTTTGAGGACTGGTTTTTCAAAGTAGTTGTACCATATTTCAATTCTGTAGGTGAAGGTCCGAAAGCAATACTGGGAGATAACCTGGCTAGTCATCTGTCTGTAAAGGTTATACAGAAATGTGCGGAATCGAATATTCGTTTCATATTTCTCCCTGCAAATAGTTCACACCTAACCCAACCGCTCGATGTCGCTTACTTCCGTCCACTAAAAGCGATATGGCGAAAAACTTTATTAGAATGGAAACAGAAAACCAGGGGCTGCATTCCTAAAGATCAGTTCCCGCGACTTTTAAAACGATCGTTAGATCAATTGTTGACATCTTCAGAGAATTTGAAGTCAGGTTTTCGTGCAGCTGGGATTTGCCctctaaacaaacaaacagttttgGCCAAGCTTCCCCTTGAAACTCCAAAAGATAACAGCGCTTCTAAAGAATGGGCGAGGGCATTCGaaagttttttaaaagaaagtcgtcTTAATACATCAGCTCCTCTTAAagtgaaaaagaagaaattgcAAGCTTCGGCAGGTCAAAGCCTTACAGTCTCCGATATTACAAATCCTTCAAATACTCAAAACATTGAAGAAGTTGACGTGGGAACTTGTGATTTAGAAGAAGATTATTTGGAAGTAAACATTGATTCAGACCCTTTAATTACGCAACCGAAAACAACACGTGAAGAAGATACAGATACTACAGTTTCTAGCAATTATTCTGTACATGATACATCTGACAGTGATAATATATCCGAATTCCAAGATTTCGATAATTTAATAGAAGAAACCACAACACAATCAAATGTTATTCCtaacataaaactaaaacaacaaAGAAAACTTGTAAATTTAGATTCTGAagatcaagaaaatatttttttccagccAAGAGTGTCCAAATCGCGACAGAAATCAAAAGGTCAAGAAGACATAATTTCACGATCAAAAATATCCAAATCATCACAGAAACCGTCTTCTTCCACAAAAGATCAGGATAACTGCGTACGACGCAAAGAAGCGATTCGCGTGGACCACGCGCAAAGAGCGCAGGCGCGGTAA
- Protein Sequence
- MGRYRKKIGSRPYRNYSNEAVENAVASVRKGMSIRKAAEKYSVPPATVQRKVCCKHMKKVGRPTVFSIEDENIIVEALILCGKWGFPITAFDLTLIVKHYLDTKGKTEPRFKNNLPGRFWLKGFLDRNKHEISYKFCENIKRARAAVNPEMISDYFDNLMISLEGVRPEAIVNFDETNFTDDPGKTKVLVRRGFKSPKNIIDASKSSTSVMFAGSASGVLLPIYVVYKAEHLYDSWLTGGPANTLYNRTRSGWFDSTTFEDWFFKVVVPYFNSVGEGPKAILGDNLASHLSVKVIQKCAESNIRFIFLPANSSHLTQPLDVAYFRPLKAIWRKTLLEWKQKTRGCIPKDQFPRLLKRSLDQLLTSSENLKSGFRAAGICPLNKQTVLAKLPLETPKDNSASKEWARAFESFLKESRLNTSAPLKVKKKKLQASAGQSLTVSDITNPSNTQNIEEVDVGTCDLEEDYLEVNIDSDPLITQPKTTREEDTDTTVSSNYSVHDTSDSDNISEFQDFDNLIEETTTQSNVIPNIKLKQQRKLVNLDSEDQENIFFQPRVSKSRQKSKGQEDIISRSKISKSSQKPSSSTKDQDNCVRRKEAIRVDHAQRAQAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00072705; iTF_00072706; iTF_00072707; iTF_00072708; iTF_00072709; iTF_00072710; iTF_00072711; iTF_00072712; iTF_00072698; iTF_00072700; iTF_00072701; iTF_01334692; iTF_01334691; iTF_01334696; iTF_01334694; iTF_01334695; iTF_01334697; iTF_01334698; iTF_01334719; iTF_00072713;
- 90% Identity
- iTF_01152028;
- 80% Identity
- -