Atra020666.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063578.1:4551301-4553667[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-10 7.7e-08 32.5 0.0 2 38 18 53 17 59 0.88
Sequence Information
- Coding Sequence
- ATGGGAAGGTATCGAAAGAAAATTGGGTCACGGCCATACCGTAACTACTCCAATGAAGCGGTTGAAAATGCAGTGGCTTCAGTGCGAAAAGGTATGTCGATTAGAAAAGCtgcagaaaaatataatgttccACCAGCCACTGTACAGAGAAAAGTGCGTTGTAAGCATATGAATAAAGTTGGAAGACCCACAGTTTTTTCAAAtgaagatgaaaatataattgtagaaGCCTTAATTCTTTGCGGGAAATGGGGATTTCCTATAACAGCCTTTGACTTGACGCTTATTGTGAAGCAATACCTTGACACGAAGGGAAAGACAGAACCTAGATTTAAGAACAATTTGCCAGGAAGATTTTGGTTGAAAGGATTTTTAGACCGAAACAAACATGAAATTTCGTACAAGTTTtgtgaaaacattaaaagaGCAAGAGCTGCTGTTAATCCTGAAATGATATCTGATTATTTTGATAATCTAATGATTAGCTTGGAGGGAGTAAAACCAGAAGCAAttgtgaattttgatgaaactaacTTTACCGACGACCCTggaaaaacaaaagtattagtAAGAAGAGGTTTCAAAAGTCCAAAAAATATCATTGACGCTTCGAAATCGAGCACATCGGTTATGTTTGCAGGATCAGCATCAGGAGCTTTATTACCAATATATGTCGTATATAAGGCTGAGCACCTTTACGATTCTTGGTTGAGAGGAGGGCCAGCTAATACATTCTACAATCGAACAAGAAGCGGTTGGTTTGACAGTACAACGTTTGAAGACTGGTTTTTCAAAGTGGTTGTACCTTATTTCAGTTCGGTAGGTGAAGGTCCGAAAGCAATACTAGGAGATAACCTGGCAAGTCATCTGTCTGTAAAGGTTATACAAAAATGTGCGGAATCAGATATTCGTTTCATATTTCTCCCTGCAAATAGTTCACACTTAACCCAACCGCTTGATGTCGCTTACTTCCGTCCACTTAAAGCAATATGGCGAAAAACCTTATTAGAATGGAAGCAGAAAACCAGGGGCTGCATTCCCAAAGATCAGTTTCCGCGACTTTTAAAACGATCGTTAGATCAACTGTTGACATCTTCAGAGAATTTAAAGTCAGGGTTTCGTGCAGCTGGGATTTGCCCtctcaacaaacaaacagttctGGCCAAGCTTCCCGTTGAAACTCCAGAAAATAACAGCACATCTAAAGAATGGGCGAGTGCATTCgaaagttttttaaaagaaagtcGTCTTAATACATCAGCTCCTCTTAAAGTGAGAAAGAAAAAATTGCAAGCTTCGGCAGGTCAAAGCCTTACAGTCTCCGATATTACAAATCCTTCAAATACTCAAAATATTGAAGAAGTAGACGTGGGAATTTGTGATGCAGAAGAAGATTATTTAGAAGTAAACATAGATTCAGATCCATTATTTACGCAACCGAAAACAGCACGTGAAGAAGACACGGATACTACAGTTTCTAGCAATTATTCTGTACATGATACATCTGATAGTGATAATATATCTGAATTACAAGATTTCGATAATTTGATAGAAAAAACCACAACCCAATCAAATATCATtcctaacattaaattaaaacaacaaagaaaacatgtatatttagattctgaagatcaagaaaatatatttttccagcCAAGAGTCTCTAAATCACGAGAAAAATCAAAAGttGTTAAGCCAGTATTGTTGAAAAGAGGTCGTTACAGTTTCaatgtaaatgtaagtaatataaagccaaatcttattattaatgaaGACTGA
- Protein Sequence
- MGRYRKKIGSRPYRNYSNEAVENAVASVRKGMSIRKAAEKYNVPPATVQRKVRCKHMNKVGRPTVFSNEDENIIVEALILCGKWGFPITAFDLTLIVKQYLDTKGKTEPRFKNNLPGRFWLKGFLDRNKHEISYKFCENIKRARAAVNPEMISDYFDNLMISLEGVKPEAIVNFDETNFTDDPGKTKVLVRRGFKSPKNIIDASKSSTSVMFAGSASGALLPIYVVYKAEHLYDSWLRGGPANTFYNRTRSGWFDSTTFEDWFFKVVVPYFSSVGEGPKAILGDNLASHLSVKVIQKCAESDIRFIFLPANSSHLTQPLDVAYFRPLKAIWRKTLLEWKQKTRGCIPKDQFPRLLKRSLDQLLTSSENLKSGFRAAGICPLNKQTVLAKLPVETPENNSTSKEWASAFESFLKESRLNTSAPLKVRKKKLQASAGQSLTVSDITNPSNTQNIEEVDVGICDAEEDYLEVNIDSDPLFTQPKTAREEDTDTTVSSNYSVHDTSDSDNISELQDFDNLIEKTTTQSNIIPNIKLKQQRKHVYLDSEDQENIFFQPRVSKSREKSKVVKPVLLKRGRYSFNVNVSNIKPNLIINED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00146330;
- 90% Identity
- iTF_00072705;
- 80% Identity
- iTF_00072701;