Basic Information

Insect: Apolygus lucorum
Gene Symbol: salm
Assembly: GCA_009739505.2
Location: CM019171.2:33039016-33195933[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.8e-06 0.00032 21.1 0.9 1 23 279 301 279 301 0.98

2 8 7.6e-06 0.00063 20.2 2.1 1 23 307 329 307 329 0.98

3 8 0.87 72 4.3 3.7 3 23 618 638 617 638 0.93

4 8 4.6e-08 3.8e-06 27.1 0.6 1 23 644 666 644 666 0.97

5 8 0.00052 0.043 14.4 2.7 1 23 676 698 676 698 0.98

6 8 1.9e-07 1.6e-05 25.2 1.4 1 23 963 985 963 985 0.99

7 8 1.1e-06 8.8e-05 22.9 4.0 3 23 1140 1160 1138 1160 0.96

8 8 6.7e-07 5.5e-05 23.5 0.6 1 23 1166 1188 1166 1188 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.8e-06	0.00032	21.1	0.9	1	23	279	301	279	301	0.98
2	8	7.6e-06	0.00063	20.2	2.1	1	23	307	329	307	329	0.98
3	8	0.87	72	4.3	3.7	3	23	618	638	617	638	0.93
4	8	4.6e-08	3.8e-06	27.1	0.6	1	23	644	666	644	666	0.97
5	8	0.00052	0.043	14.4	2.7	1	23	676	698	676	698	0.98
6	8	1.9e-07	1.6e-05	25.2	1.4	1	23	963	985	963	985	0.99
7	8	1.1e-06	8.8e-05	22.9	4.0	3	23	1140	1160	1138	1160	0.96
8	8	6.7e-07	5.5e-05	23.5	0.6	1	23	1166	1188	1166	1188	0.98

Sequence Information

Coding Sequence: ATGGAGTTTGCTGGGTTTCCTGAGCTCGCTGAGCACGTGAAAGACTGCGTTAAAGCTACTTCGTGTCCAACTCCAACTTCCGTTGTATCAGAGGAtgaatatgaaggggaaaagaGACAAGAAGAAGCGAGGCGGCAGCGGCAAGACGCTGAGAACAACAATAgcgttgaagaagaagaaggagaagtcGGGTTTCCGCTGGGTCACGTTACCCTGGAAGCCCTGCAGAACACCAAAGTGGCAGTGGCGCAGTTTGCTGCCACAGCTATGGCGAATAATGCTGACAATCCGGCCGCCCTTCAAGAACTTGCAGTGCTTCAATCGACGCTCTACACCTTGCAACACCAACAAATGATGCAGCTGAACCTGATACAACAGCTGCAACAGCAGTTGCAGATCACGAGGCCTCAGAAAGACGGCAGTCCATCCTCTCCCCCTCCTCAAGTGGGTCCGAGTAGGACTCCAACTCCCGTCAGATCTGATGTTCCTCCAACTCCCCCGACATCACAGTCCCTTCCTGCGAGCCAGGTACCTCTCCCTCCGAAACCTGAGCCGTCCCCACCTGTACATCATCAACCCTCCTTACCACCCTGTTCCATATCATCAGCTTTCGCATCATCCATCATCACGAACCTAGACCCACCTCCATCCCCTAGCGAGCCCAACACTCTTGAAATGTTACAAAAACGAGCTCAAGAGGTTTTGGACAACGCCAGCCAAGGGCTTCTTGCAAACAACCTCGCCGATGAACTAGCATTTCGAAAGAATGGAGGAAAAGGCAGCCTATCACCTTACGACTCCAAGACAGGAGGTAGGAATGAACCTTTCTTCAAGCATAGGTGTCGATATTGTGGCAAAGTATTTGGGAGCGATTCAGCTTTGCAGATTCATATAAGATCTCATACGGGAGAAAGGCCTTTCAAGTGCAATGTATGTGGTAGCAGGTTTACCACAAAAGGAAATCTTAAAGTTCATTTTCAACGTCATTCGGCCAAATTCCCCCATATTAAAATGAATCCCAACCCTATACCTGAGCACTTGGACAAATACCATCCACCTCTATTAGCTCAAATGGGAGCACACCAAAGTCTGCCACCAGGGCCGCCTCACCCACCTTATTCAGGGGGGCCCCAATTCCCTTCAGGTCTACCAATGTACAGGCCACCTCCAGCCCCTCATGACCTTGTTCTTCCATCTCATCCCAGACCTCCTTTAGACCCTATGCCAACCAAGCCTGTACTTCCTCTGCCTCTATTCGGTCCCCAAGACGTTCCTGAAAACCTCAGTAAAGCTTCTTCGTCCTCCCCTGACCGAGCCTACAAAGAAGAGCCTAAGGAAGATGTGGAAGATGAAAGGCTGACTCCGAAAAAAGAGCCAGTCGAAGGAGAAGCAGACCCAGAAAGATACCCTTCACCGCCTCCTTATGACGACTGCAGCTTAGACTCGAGCAAGTACACTGTGGACGATGTACCAGGTGACAGGGACAGTCCTGGTATGGAGAAAAATGAGGATAGTCTTCAAGATCAACCGGAAAACCTCTCTAATAAAAGTACGTCAGATATTGGTCATTTATCTTTAAATCTTGACCACTGTTTGCCTCCTCCGGCCCGTTATCCAGATATGGTATCTCCTAGTAGCACATCATCAGGTAGCGTACATAGGGGATTCCTTCCTTCATCCAACGATCCCGATCCTTTAAAAGATCCCGCCATATATTCCAGTCTCCTGCCCAGGCCTGGTAGCACCGACAACTCGTGGGAAAGCCTCATTGAAATAACAAAAACGTCTGAAACTCATAAGCTGCAATTAATGGTAGACAATATTGAGAACAAAATGATTGATCCAAATCAGTGTATCATATGCCACAGAGTACTATCTTGCAAGAGTGCATTACAAATGCACTACAGGACACATACCGGTGAGAGGCCTTTTAGATGTAAAATCTGTGGCCGCGCATTCACAACTAAAGGCAACCTGAAAACCCACATGGGTGTGCACAGGATTAAACCGCCGATGAGGATGCTTCACCAATGCCCTGTCTGTCACAAGAAGTTCACTAATGGCCTCGTGCTGCAGCAGCACATCAGGCTTCACACTGGCGAACCCACAGATTTGACTCCGGAGCAGATCCAGGCGGCAGAAATCAGAGACTTCGTTCCTACATCCGAACCACAACTCCGACCTTTTTCCTTTCCCCAAATGTTTTCAAGGGATCCTCATCTAGTCCATAACCCTGATGTTCCTTTACCACCTTCCTCGTCCCCAAGTCCTAGTACCCATTTCCCATCCAAAGAGGAGGACAAGCCCGATTACATTGAGGAGAGCCGTGCTAGTAGCGTCAGTCCAATTTCCGATGCGGCATTCTCCACTTCCATAACTGCTCTAGAAAACCAAGTTCGAACTATCACAACAACAGCTTCTCATTACCCTCCCAGTAAATGTGATGAGTCAACAACTGATGACCTGTTGAATAACAAAGATTTAAACCCTATTACAGTGAACGGAGAGAAATCCCCAGGTTCCAGAGGTGGGATGGAGAGCCCTAGCGGTTCAGAAGGCCCCCTGACGCCTTCTCCTCTCCATCCCAGCAACGCCTTGTCTCTGCAGATGCCCAGACAACCTCCCAGTCCGTCTCCAGCGTCGGAGTCGTCGTCACTGGGTGCCCTAGACCTCACACCAAGGTCCGGGGGTCCACCAGTCTCCCACTCGCTGTTCTCTGGATTTGGTATTATGCCGCCTGGTTCCATGGCGAGTTCGTCACCCCTCATGACGTCAGCTCTGTCCTCGCTGACGTCTTCAGTCCTCACGACGACAGCCTTCAACCCTTTGGGTCTTGCTGTCGGACCACCAGAAATCCACTATAGAAGCCATACGAAAGAGCGTCCGTTCAAATGCACCATTTGCGACCGAGGATTCTCCACGAAGGGTAACATGAAGCAGCACATGTTGACCCATAAGATCCGCGACATGCCGGCGCATCTCTTCGAGCAGAAAGCTGCTCAGGCAGGGATCCTGCCAACAAGCAGCAGCAACCCGCCTCTCGGCGCCCCACAGCCTCCTGGGACACAAGGACTCCCAGCATCGATGTCGTCCCCCCACCTCGGCCCCAATGTACCGCAGAGGCCGCCTAGCGGACCTCCGAACTCCATAGCGAGCTCTTCCTGCGACGGTGAGAGTCGAGGGAGTGAAACGAGTCCTCCGCCCCACCTGCCTCAGATCCCTCAGCAGCTCAACCCTCAGCAGCATATCCATCATCCGACGCCGCCGCTGCAACAACCGATGAGTGCTCAGCAGCCGGTACCCATCCCTCAGCAGCAACCTCTGAAGCCTGAGTTGGGCGTCAAAAGGTCTCCACCCCAAGGAGACACTGCCAGCATGCCTCTCCCCAAAAGACAACCAAGCTTACCCAAGCACTTGTGCCATGTTTGCAATAAGAACTTCTCCTCATCGTCTGCTCTCCAGATCCACATGCGGACGCATACTGGCGACAAACCTTTCCGATGCTCTATCTGCCTCAAAGCTTTCACCACCAAAGGCAACCTCAAGGTGCACATGGGTACGCATATGTGGACCAACGGGGCGTCTCGTCGCGGTCGGAGGATGTCCTTAGAGCTCCCGCCACTCCCAAAGGATTCAGACTTCCTTCACAGGAGGCCCGATCTCTTCTACCCATACCTCCCGGCGCCCTTCCTTAACGGCATCCACCAAAAGCTGTCGGAAATGCCCCCGATGGGTGGTGGAGGCGGAGGAGGCCCCAACGGAATGGTCTCCTATGGAGGCTTCCCGGGAGAACTGAAAGGAGAGCCTCGGTCACCGGACAAAGCGCCACACTCAGGGGCTACACCCCCATCACTCTGGGATCTCCACCTGAAGCAGTCGTCCCATCATCATCGAGAAGACAGCTCGCCGCCCTCCAACATGCCTCCTCCACGAGGTGAAGGGCTCGCCGCATGA
Protein Sequence: MEFAGFPELAEHVKDCVKATSCPTPTSVVSEDEYEGEKRQEEARRQRQDAENNNSVEEEEGEVGFPLGHVTLEALQNTKVAVAQFAATAMANNADNPAALQELAVLQSTLYTLQHQQMMQLNLIQQLQQQLQITRPQKDGSPSSPPPQVGPSRTPTPVRSDVPPTPPTSQSLPASQVPLPPKPEPSPPVHHQPSLPPCSISSAFASSIITNLDPPPSPSEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKNGGKGSLSPYDSKTGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPIPEHLDKYHPPLLAQMGAHQSLPPGPPHPPYSGGPQFPSGLPMYRPPPAPHDLVLPSHPRPPLDPMPTKPVLPLPLFGPQDVPENLSKASSSSPDRAYKEEPKEDVEDERLTPKKEPVEGEADPERYPSPPPYDDCSLDSSKYTVDDVPGDRDSPGMEKNEDSLQDQPENLSNKSTSDIGHLSLNLDHCLPPPARYPDMVSPSSTSSGSVHRGFLPSSNDPDPLKDPAIYSSLLPRPGSTDNSWESLIEITKTSETHKLQLMVDNIENKMIDPNQCIICHRVLSCKSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMGVHRIKPPMRMLHQCPVCHKKFTNGLVLQQHIRLHTGEPTDLTPEQIQAAEIRDFVPTSEPQLRPFSFPQMFSRDPHLVHNPDVPLPPSSSPSPSTHFPSKEEDKPDYIEESRASSVSPISDAAFSTSITALENQVRTITTTASHYPPSKCDESTTDDLLNNKDLNPITVNGEKSPGSRGGMESPSGSEGPLTPSPLHPSNALSLQMPRQPPSPSPASESSSLGALDLTPRSGGPPVSHSLFSGFGIMPPGSMASSSPLMTSALSSLTSSVLTTTAFNPLGLAVGPPEIHYRSHTKERPFKCTICDRGFSTKGNMKQHMLTHKIRDMPAHLFEQKAAQAGILPTSSSNPPLGAPQPPGTQGLPASMSSPHLGPNVPQRPPSGPPNSIASSSCDGESRGSETSPPPHLPQIPQQLNPQQHIHHPTPPLQQPMSAQQPVPIPQQQPLKPELGVKRSPPQGDTASMPLPKRQPSLPKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCSICLKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLELPPLPKDSDFLHRRPDLFYPYLPAPFLNGIHQKLSEMPPMGGGGGGGPNGMVSYGGFPGELKGEPRSPDKAPHSGATPPSLWDLHLKQSSHHHREDSSPPSNMPPPRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00930631; iTF_00884505; iTF_00386621; iTF_01365792;
90% Identity: iTF_00386621;
80% Identity: -