Ldol063598.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- salm
- Assembly
- GCA_954871275.1
- Location
- OX940985.1:11459574-11474303[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.3 4e+02 3.9 0.7 3 21 31 49 29 58 0.92 2 10 4.3e-06 0.0014 21.1 0.9 1 23 311 333 311 333 0.98 3 10 8.6e-06 0.0027 20.1 2.1 1 23 339 361 339 361 0.98 4 10 0.98 3.1e+02 4.2 3.7 3 23 651 671 650 671 0.93 5 10 5.2e-08 1.7e-05 27.1 0.6 1 23 677 699 677 699 0.97 6 10 0.00059 0.19 14.3 2.7 1 23 709 731 709 731 0.98 7 10 0.0079 2.5 10.8 2.4 2 23 989 1010 988 1010 0.97 8 10 2.1e-07 6.8e-05 25.2 1.4 1 23 1016 1038 1016 1038 0.99 9 10 1.2e-06 0.00038 22.8 4.0 3 23 1191 1211 1189 1211 0.96 10 10 7.5e-07 0.00024 23.4 0.6 1 23 1217 1239 1217 1239 0.98
Sequence Information
- Coding Sequence
- ATGAAGACGACGGTGGAACGCGAGGGAAAGAACCTCTGGTGTGAAAGCTGCTCAGGTTCCGAGGATGAAGAAGGCACTGGTCAAGTGAATTGTCCGCATTGCCAGATGGAGTTCGCTGGATTCCCTGAGCTTTCTGAGCACGTGAAAGACTGCGTCAAAGCTTGTACAACTCCTACTTCCGTTGTATCAGAGGACGAATATGAGGGGGAGAAGAGGCAGGAAGAAGCGAGGCGGCAGCGGCAGGATGCTGAGAACAACAATAGTGTggaagaggaagaaggagaGGTCGGGTTTCCACTGGGCCACGTAACGCTGGAAGCTCTGCAGAACACCAAAGTGGCAGTGGCGCAATTCGCTGCCACAGCTATGGCAAATAATGCCGACAACCCGGCCGCTCTTCAGGAGCTAGCAGTCCTCCAGTCGACCCTTTACACCTTGCAACATCAGCAAATGATGCAGCTGAACCTGATACAGCAGTTACAGCAGCAGCTACAGATCACGAGGCCACAGAAAGAGGGCAGTCCTTCCTCTCCCCCTCCTCAAGTGGGTCCAAGCAGGACTCCTACTCCTGTCAGATCAGATGTTCCTCCGACACCTCCGACTTCACAGTCAGTTCCTGCGAGCCAGGCACCTCTCCCTCCGAAACCTGAGCCGTCTCCTCCTGTTTATCAACCCTCATTACCCCCCTGTTCCATATCATCGTCTTTCGCATCCTCCATCATCACAAACCTAGACCCACCTCCATCCCCTAGCGAGCCCAACACTCTTGAAATGCTACAAAAACGAGCTCAAGAGGTACTGGACAACGCCAGCCAAGGGCTTCTTGCAAACAACCTCGCCGATGAACTAGCATTTCGAAAGAACGGAGGAAAGGGCAGCCTATCACCTTACGACTCCAAGACAGGAGGTAGGAATGAACCTTTCTTCAAGCATAGGTGTCGATATTGTGGCAAAGTATTTGGGAGCGATTCAGCTTTGCAGATTCATATAAGATCTCATACGGGTGAAAGGCCATTCAAGTGCAATGTATGTGGTAGCAGGTTTACCACTAAAGGAAACCTTAAAGTTCATTTTCAACGTCATTCGGCCAAGTTCCCTCATATTAAAATGAATCCCAATCCCATACCGGAGCATTTGGACAAATACCATCCACCTCTATTAGCTCAAATGGGAGCCCACCAAAGTCTGCCACCAGGGCCGCCCCATCCACCATACTCGGGGGGGCCCCAATTCCCTTCAGGTCTACCAATGTACAGGCCGCCTCCAGCTCCTCACGACCTTGTCCTTCCTCCTCACTCCCGACAGTCTTTAGATCCTATGCCAACCAAGCCTGTACTCCCTCTGCCTCTGTTTGGTCCCCAAGAAGTTCCTGAAAACCTCAGTAAAGCTTCGTCGTCCTCCCCTGACAGACCTTACAAAGAAGAGCCAAAGGAAGACGTGGAGGATGAGAGGCTGACTCCAAAAAAAGAACCAGTCGAAGGAGAACAAGACCCTGAAAGGTATCCTTCACCGCCTCCTTATGATGACTGCAGCTTAGACTCGAGCAAGTACACTATGGACGATGTACCAGGTGACAGGGATAGTCCTGGTTTGGAGAAAAATGAGGATAGTCTTCAAGATCAACCGGAAAACCTCTCTAATAAAAGTACGTCAGATATTGGTCATTTATCTTTAAATCTTGACCACCGCTTGCCTCCTCCGGCCCGTTACCCAGATATGGTATCACCTCCTAGTAGCACATCATCAGGTAGCGTACATAGGGGATTCCTTCCTTCATCCAATGATCCTGATCCTTTGAAAGATCCCGCCATATATTCCAGTCTCCTGCCCAGGCCTGGTAGCACCGACAACTCGTGGGAAAGCCTCATTGAAATCACAAAAACCTCTGAAACTCATAAGCTACAATTAATGGTAGACAATATTGAGAATAAAATGATTGACCCAAATCAGTGTATTATATGCCACAGAGTGCTATCTTGCAAGAGTGCATTACAAATGCACTACAGGACACATACCGGTGAGAGGCCTTTTAGATGTAAAATCTGTGGCCGCGCATTCACAACCAAAGGCAACCTGAAAACCCACATGGGTGTGCACAGGATAAAACCGCCGATGAGGATGCTTCACCAATGCCCTGTCTGTCACAAGAAGTTCACTAATGGCCTCGTGCTGCAGCAGCACATCAGGCTTCACACTGGCGAACCCACAGATTTGACACCGGAGCAGATCCAGGCGGCAGAAATCCGAGACTTCGTTCCTAAATCCGAACCACAACTCCGACCTTTTTCCTTTCCTCAAATGTTCTCAAGGGATCCTCACCTAGTCCATAACCCTGATGTTCCTATACCACCGTCCTCATCCCCAACTCCTAGCACCCACTTCCCATCCAAAGAGGAGGACAAGCCCGATTACATTGAGGAGAGCCGTGCTAATAGCGTCAGTCCAATATCCGATGCGGCATTCTCCACTTCCATAACTGCTCttgaaaaccaagttcgaaCAATCACAACAACAGCTTCCCATTACCCTCCCAGTAAATGTGCAAATGAACCCACCAATGAATTGTCAAATAACAAAGATTTAAACCCTATTACAGTGAACGGAGAGAAATCCCCAGGTTCCAGAGGAGGGATGGAGAGCCCTAGTGGTTCCGAAGGTCCTCCAACTCCGTCGCCTCTCTATCCCAGCAACGCCCTGTCTCTCCAGATGCCCAGACAACCGCCCAGCCCATCGCCGGCGTCGGAATCGTCGTCACTGGGCGCCTTAGACCTGACGCCCAGGTCCGGAGGCCCTCCCGTCTCCCACTCGCTGTTCTCCGGGTTCGGCATCATGCCGCCCGGCTCGATGGCGAGTTCTTCTCCACTGATGACGTCGGCTTTGTCTTCCCTTACGTCGTCTGTCCTAACGACGACGGCCTTCAACCCCCTGGGACTCGCTGTTGGCCCACCAGGTCGGGGAAACACGACGTGCAATCTTTGTTTCAAAACATTTGCGTGCAATTCCGCTTTAGAAATCCACTACAGAAGTCACACTAAAGAGCGACCGTTCAAATGCACCATTTGCGACCGAGGATTCTCCACGAAGGGGAACATGAAGCAGCACATGCTGACCCACAAGATCCGCGACATGCCGGCTCACCTCTTCGAGCAGAAAGCAGCTGCTGCCGGGATCCTTCCAACCAGCAGCAGCAACCCTCCCCTCGGAGCTCCTCAACCTCCAGGGACTCAAGGGCTTCCTGCAACGATGTCTTCCCCTCACCTGGGCCCCAACCATCCGCACAGGCCGCCCAGCGGACCACCCAACTCCATGGCGAGCTCCTCATGCGACGGGGAGAGCCGGGGCAGCGAGACGAGTCCTCCGCCTCATCATCCGCAGATGCCTCAGCAGCTCGCTCCTCAGCCACCACCTCAGCAGCAGCTGCTGCAGCAGCCGATAAGCGCTCAGCAGCCTGTACCTATTCCTCAGCAGCAACCGCTGAAGACCGAGCTGGGCGTGAAAAGATCTCCACCTCAAGGAGACACTGCCAGCATGCCTCTCCCAAAAAGACAACCAAGCTTACCCAAGCACTTGTGCCATGTTTGCAATAAGAACTTCTCCTCATCGTCTGCTCTCCAGATCCACATGCGGACGCATACTGGCGACAAACCTTTCCGCTGCTCTATCTGCCTCAAGGCCTTCACCACCAAAGGCAACCTCAAGGTGCACATGGGTACGCATATGTGGACCAACGGGGCGTCGCGCCGGGGTCGGAGAATGTCCTTAGAGCTCCCACCGCTCCCAAAGGATTCAGACTTCCTACACAGGAGGCCCGATCTCTTCTACCCATACCTCCCGGCGCCCTTCCTTAACGGCATCCACCAAAAGCTGTCGGAAATGCCTCCGATGGGTGGTCCAGGCGGTGGCGGCCCCAACGGAATGGTATCCTACGGAGGCTTCCCAGGGGAGCTGAAAAGAGAGCCTCGCTCGCCGGACAAAGCGCCGCACTCAGGAGCTATGCCCCCCTCGCTGTGGGACCTTCACCTCAAGCAATCGCCGCATCATCATTCCGAAGACAGCTCCCCGCCCTCCAACATGCCTCCACCCCGAGGTGAAGGCCTAGCTGCATGA
- Protein Sequence
- MKTTVEREGKNLWCESCSGSEDEEGTGQVNCPHCQMEFAGFPELSEHVKDCVKACTTPTSVVSEDEYEGEKRQEEARRQRQDAENNNSVEEEEGEVGFPLGHVTLEALQNTKVAVAQFAATAMANNADNPAALQELAVLQSTLYTLQHQQMMQLNLIQQLQQQLQITRPQKEGSPSSPPPQVGPSRTPTPVRSDVPPTPPTSQSVPASQAPLPPKPEPSPPVYQPSLPPCSISSSFASSIITNLDPPPSPSEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKNGGKGSLSPYDSKTGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPIPEHLDKYHPPLLAQMGAHQSLPPGPPHPPYSGGPQFPSGLPMYRPPPAPHDLVLPPHSRQSLDPMPTKPVLPLPLFGPQEVPENLSKASSSSPDRPYKEEPKEDVEDERLTPKKEPVEGEQDPERYPSPPPYDDCSLDSSKYTMDDVPGDRDSPGLEKNEDSLQDQPENLSNKSTSDIGHLSLNLDHRLPPPARYPDMVSPPSSTSSGSVHRGFLPSSNDPDPLKDPAIYSSLLPRPGSTDNSWESLIEITKTSETHKLQLMVDNIENKMIDPNQCIICHRVLSCKSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMGVHRIKPPMRMLHQCPVCHKKFTNGLVLQQHIRLHTGEPTDLTPEQIQAAEIRDFVPKSEPQLRPFSFPQMFSRDPHLVHNPDVPIPPSSSPTPSTHFPSKEEDKPDYIEESRANSVSPISDAAFSTSITALENQVRTITTTASHYPPSKCANEPTNELSNNKDLNPITVNGEKSPGSRGGMESPSGSEGPPTPSPLYPSNALSLQMPRQPPSPSPASESSSLGALDLTPRSGGPPVSHSLFSGFGIMPPGSMASSSPLMTSALSSLTSSVLTTTAFNPLGLAVGPPGRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKGNMKQHMLTHKIRDMPAHLFEQKAAAAGILPTSSSNPPLGAPQPPGTQGLPATMSSPHLGPNHPHRPPSGPPNSMASSSCDGESRGSETSPPPHHPQMPQQLAPQPPPQQQLLQQPISAQQPVPIPQQQPLKTELGVKRSPPQGDTASMPLPKRQPSLPKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCSICLKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLELPPLPKDSDFLHRRPDLFYPYLPAPFLNGIHQKLSEMPPMGGPGGGGPNGMVSYGGFPGELKREPRSPDKAPHSGAMPPSLWDLHLKQSPHHHSEDSSPPSNMPPPRGEGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00145857;
- 90% Identity
- iTF_00386621;
- 80% Identity
- -