Basic Information

Insect: Lygus lineolaris
Gene Symbol: salm
Assembly: GCA_030264115.1
Location: JAEMON010000011.1:11034504-11049086[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.4e-06 0.00052 21.1 0.9 1 23 279 301 279 301 0.98

2 9 1.1e-05 0.001 20.1 2.1 1 23 307 329 307 329 0.98

3 9 1.2 1.2e+02 4.2 3.7 3 23 619 639 618 639 0.93

4 9 6.5e-08 6.3e-06 27.1 0.6 1 23 645 667 645 667 0.97

5 9 0.00073 0.071 14.4 2.7 1 23 677 699 677 699 0.98

6 9 0.0098 0.95 10.8 2.4 2 23 957 978 956 978 0.97

7 9 2.6e-07 2.6e-05 25.2 1.4 1 23 984 1006 984 1006 0.99

8 9 1.5e-06 0.00014 22.8 4.0 3 23 1169 1189 1167 1189 0.96

9 9 9.4e-07 9.1e-05 23.5 0.6 1 23 1195 1217 1195 1217 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.4e-06	0.00052	21.1	0.9	1	23	279	301	279	301	0.98
2	9	1.1e-05	0.001	20.1	2.1	1	23	307	329	307	329	0.98
3	9	1.2	1.2e+02	4.2	3.7	3	23	619	639	618	639	0.93
4	9	6.5e-08	6.3e-06	27.1	0.6	1	23	645	667	645	667	0.97
5	9	0.00073	0.071	14.4	2.7	1	23	677	699	677	699	0.98
6	9	0.0098	0.95	10.8	2.4	2	23	957	978	956	978	0.97
7	9	2.6e-07	2.6e-05	25.2	1.4	1	23	984	1006	984	1006	0.99
8	9	1.5e-06	0.00014	22.8	4.0	3	23	1169	1189	1167	1189	0.96
9	9	9.4e-07	9.1e-05	23.5	0.6	1	23	1195	1217	1195	1217	0.98

Sequence Information

Coding Sequence: ATGGAGTTCGCTGGCTTTCCTGAGCTCGCTGAGCACGTGAAAGACTGCGTCAAAGCTGCTTCATGTCCGACTCCAACTTCCGTTGTATCAGAGGATGAATATGAGGGGGAGAAGAGGCAAGAGGAAGCGAGGCGGCAAAGGCAGGATGCTGAGAACAACAACagcgttgaagaagaagaaggagaggtCGGATTCCCGCTAGGCCACGTTACTCTGGAAGCCCTGCAGAACACCAAAGTGGCAGTGGCGCAGTTTGCTGCCACAGCTATGGCAAACAATGCTGACAATCCGGCCGCCCTTCAGGAACTAGCAGTGCTCCAATCGACCCTCTACACCTTGCAACACCAACAAATGATGCAGCTGAATCTGATACAGCAGTTGCAACAGCAGTTGCAGATCACGAGGCCTCAGAAAGAGGGCAGTCCATCCTCTCCCCCTCCTCAAGTGGGTCCGAGTAGGACTCCAACTCCCGTCAGATCTGATGTTCCTCCGACTCCCCCGACTTCACAGTCCCTTCCTGCGAGCCAGGTGCCTCTCCCTCCAAAGCCTGAGCCGTCTCCACCTGTACATCATCAACCCTCCTTACCTCCCTGTTCCATATCATCGTCTTTCGCATCATCCATCATCACAAACCTAGACCCACCTCCATCCCCTAGCGAGCCCAACACTCTTGAAATGTTACAAAAACGAGCTCAAGAGGTTCTGGACAACGCCAGCCAAGGGCTTCTTGCAAACAACCTCGCCGATGAACTAGCATTTCGAAAGAATGGAGGAAAGGGCAGCCTATCACCTTACGACTCCAAGACAGGAGGTAGGAATGAACCTTTCTTCAAGCATAGGTGTCGATATTGTGGCAAAGTATTTGGGAGCGATTCAGCTTTGCAGATTCATATAAGATCTCATACGGGAGAAAGGCCTTTCAAGTGCAATGTATGTGGTAGCAGGTTTACCACTAAAGGAAATCTTAAAGTTCATTTTCAACGTCATTCGGCCAAATTCCCTCATATTAAAATGAATCCTAACCCTGTACCTGAGCACTTGGACAAATATCATCCACCTCTATTAGCTCAAATGGGAGCCCACCAAAGTCTGCCGCCAGGGCCGCCCCATCCACCTTACTCAGGGGGGCCCCAGTTCCCTTCAGGTCTACCAATGTACAGGCCACCTCCAGCCCCTCACGACCTTGTCCTTCCTCCTCATCCCAGACCGCCTTTAGACCCTATGCCAACCAAGCCTGTACTCCCTCTGCCTCTGTTTGGTCCCCAAGAAGTTCCTGAAAACCTCAGTAAAGCTTCTTCGTCCTCCCCTGACCGAGCCTACAAAGAAGAGCCTAAGGAAGATGTGGAAGATGAGAGGCTGACTCCCAAAAAAGAGCCAGTCGAAGGAGAAGCAGACCCAGAAAGATACCCTTCACCGCCTCCTTATGATGACTGCAGCTTAGACTCAAGCAAGTACACTGTGGACGATGTACCAGGTGACAGGGATAGTCCTGGTATGGAGAAAAATGAGGATAGTCTTCAAGATCAACCGGAAAACCTCTCTAATAAAAGTACGTCAGATATTGGTCATTTATCTTTAAATCTTGACCACTGCTTGCCTCCTCCGGCCCGTTATCCAGATATGGTATCACCTCCTAGTAGCACATCATCAGGTAGCGTACATAGGGGATTCCTTCCTTCATCCAACGATCCCGATCCTTTGAAAGATCCCGCCATATATTCCAGTCTCCTGCCCAGGCCTGGTAGCACCGACAACTCGTGGGAAAGCCTCATTGAAATCACAAAAACGTCTGAAACTCATAAGCTGCAATTAATGGTAGACAATATTGAGAATAAGATGATTGACCCAAATCAGTGTATTATATGCCACAGAGTACTCTCTTGCAAGAGTGCATTACAAATGCACTACAGGACACATACCGGTGAGAGGCCTTTTAGATGTAAAATCTGTGGCCGTGCATTCACAACCAAAGGCAACCTGAAGACCCACATGGGTGTGCACAGGATAAAACCGCCGATGAGGATGCTTCACCAATGCCCTGTCTGTCACAAGAAGTTCACTAATGGCCTCGTGCTGCAACAGCACATCAGGCTTCACACTGGCGAACCCACAGATTTGACTCCGGAGCAGATCCAGGCGGCAGAAATCAGAGACTTCGTTCCTACATCCGAACCACAACTCCGACCATTTTCCTTTCCACAAATGTTTTCAAGGGATCCTCACCTAGTCCTTAACCCTGATGTTCCTATACCACCTTCCTCATCCCCAAGTCCTAGCACCCATTTCCCATCCAAAGAGGAGGACAAGCCCGATTACATTGAGGAGAGCCGTGCTAGTAGCGTCAGTCCAATTTCCGATGCGGCATTCTCCACTTCCATAACTGCTCTAGAAAACCAAGTTCGAACTATCACAACAACAGCTTCCCATTACCCTCCCAGTAAATGTGAAAATGAGTCTACTGATGACTTGTCAAATAACAAAGATTTAAACCCTATTACAGTGAACGGAGAGAAATCCCCAGGTTCCAGAGGTGGGATGGAGAGCCCTAGTGGTTCAGAAGGCCCCCTGACGCCTTCGCCTCTCCATCCCAGCAACGCCTTGTCTCTGCAGATGCCTAGACAACCTCCCAGTCCGTCGCCAGCGTCGGAGTCGTCGTCGCTGGGTGCCTTGGACCTGACGCCCAGGTCTGGGGGTCCTCCGGTCCCTCACTCGCTGTTCTCTGGGTTCGGCATCATGCCGCCTGGATCCATGGCGAGTTCGTCACCTCTCATGACGTCAGCTCTGTCCTCGCTGACGTCGTCTGTCCTAACGACGACAGCCTTCAACCCCTTGGGTCTTGCTGTCGGACCACCAGGTCGGGGAAACACGACGTGCAATCTTTGTTTCAAAACATTTGCCTGCAATTCCGCCCTAGAAATCCACTACAGAAGCCATACGAAAGAGCGTCCATTCAAATGCACCATTTGCGACCGAGGATTCTCCACGAAGGGTAACATGAAGCAGCACATGCTGACCCACAAGATCCGAGACATGCCGGCGCACCTGTTCGAGCAGAAAGCCGCCGCAGCAGGAATCCTGCCTACCAGCAGCAGCAACCCTCCTCTCGGCGCCCCACAGCCGCCCGGGGTTCAAGGGCTCCCAGCCACCATGCTGTCCCCCCATCTCGGCCCCAACCTACCGCAAAGGCCCCCCAGCGGACCGCCCAACTCCATAGCGAGCTCCTCCTGCGACGGCGAGAGCCGAGGGAGCGAGACGAGTCCTCCGCCCCACCTGCCGCAGATGCCTCAGCAGCACAATCCTCAGCAGCAGCATAACCCTCAGCAGCATATGCCTCAGCAGACGCCACCGCAGCAACATCAACAACCGATGAGCGCTCAGCAACCGGTACCCATCCCTCAGCAGCAACCTCTGAAGCCTGAGTTGGGCGTAAAAAGGTCTCCTCCCCAAGGAGACACTGCCAGCATGCCTCTCCCCAAAAGGCAACCAAGCTTACCCAAGCACTTGTGCCATGTTTGCAATAAGAACTTCTCCTCATCGTCTGCTCTCCAGATCCACATGCGGACGCATACTGGCGACAAACCTTTCCGATGCTCTATCTGCCTCAAAGCTTTCACCACCAAAGGCAATCTCAAGGTGCACATGGGTACGCATATGTGGACCAACGGGGCATCACGTCGCGGTCGGAGGATGTCCTTAGAGCTCCCGCCGCTCCCAAAGGATTCAGACTTCCTTCACAGGAGGCCCGATCTCTTCTACCCATACCTCCCGGCGCCCTTCCTTAACGGCATCCACCAAAAGCTGTCAGAAATGCCCCCGATGGGTGGTGGAGGCGGAGGAGGCCCCAACGGAATGGTCTCCTATGGAGGCTTCCCGGGGGAGCTGAAAGGAGAGCCCCGGTCGCCGGACAAAGCGCCCCACTCGGGGGCTACGCCCCCCTCGCTGTGGGATCTCCACCTGAAGCAATCGTCCCATCATCATCCAGAAGACAGCTCGCCACCCTCCAACATGCCTCCTCCCAGAGGTGAAGGGCTCGCCGCATGA
Protein Sequence: MEFAGFPELAEHVKDCVKAASCPTPTSVVSEDEYEGEKRQEEARRQRQDAENNNSVEEEEGEVGFPLGHVTLEALQNTKVAVAQFAATAMANNADNPAALQELAVLQSTLYTLQHQQMMQLNLIQQLQQQLQITRPQKEGSPSSPPPQVGPSRTPTPVRSDVPPTPPTSQSLPASQVPLPPKPEPSPPVHHQPSLPPCSISSSFASSIITNLDPPPSPSEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKNGGKGSLSPYDSKTGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPVPEHLDKYHPPLLAQMGAHQSLPPGPPHPPYSGGPQFPSGLPMYRPPPAPHDLVLPPHPRPPLDPMPTKPVLPLPLFGPQEVPENLSKASSSSPDRAYKEEPKEDVEDERLTPKKEPVEGEADPERYPSPPPYDDCSLDSSKYTVDDVPGDRDSPGMEKNEDSLQDQPENLSNKSTSDIGHLSLNLDHCLPPPARYPDMVSPPSSTSSGSVHRGFLPSSNDPDPLKDPAIYSSLLPRPGSTDNSWESLIEITKTSETHKLQLMVDNIENKMIDPNQCIICHRVLSCKSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMGVHRIKPPMRMLHQCPVCHKKFTNGLVLQQHIRLHTGEPTDLTPEQIQAAEIRDFVPTSEPQLRPFSFPQMFSRDPHLVLNPDVPIPPSSSPSPSTHFPSKEEDKPDYIEESRASSVSPISDAAFSTSITALENQVRTITTTASHYPPSKCENESTDDLSNNKDLNPITVNGEKSPGSRGGMESPSGSEGPLTPSPLHPSNALSLQMPRQPPSPSPASESSSLGALDLTPRSGGPPVPHSLFSGFGIMPPGSMASSSPLMTSALSSLTSSVLTTTAFNPLGLAVGPPGRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKGNMKQHMLTHKIRDMPAHLFEQKAAAAGILPTSSSNPPLGAPQPPGVQGLPATMLSPHLGPNLPQRPPSGPPNSIASSSCDGESRGSETSPPPHLPQMPQQHNPQQQHNPQQHMPQQTPPQQHQQPMSAQQPVPIPQQQPLKPELGVKRSPPQGDTASMPLPKRQPSLPKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCSICLKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLELPPLPKDSDFLHRRPDLFYPYLPAPFLNGIHQKLSEMPPMGGGGGGGPNGMVSYGGFPGELKGEPRSPDKAPHSGATPPSLWDLHLKQSSHHHPEDSSPPSNMPPPRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00145857;
90% Identity: iTF_00386621;
80% Identity: -