Basic Information

Insect: Apodemia mormo
Gene Symbol: -
Assembly: GCA_036924255.1
Location: JAUPFN010000040.1:606576-626529[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.26 4.2e+03 -0.6 0.1 23 46 95 118 89 128 0.82

2 13 0.4 6.4e+03 -1.2 0.0 26 43 126 143 122 148 0.88

3 13 4.1e-05 0.66 11.5 0.2 22 47 150 175 141 180 0.86

4 13 0.87 1.4e+04 -2.3 0.0 26 43 319 336 316 348 0.81

5 13 0.82 1.3e+04 -2.3 0.0 23 43 345 365 336 369 0.87

6 13 4.6e-06 0.074 14.6 0.0 21 47 371 397 363 402 0.88

7 13 0.033 5.3e+02 2.2 0.1 4 45 466 507 464 514 0.72

8 13 0.00023 3.7 9.1 0.1 23 43 513 533 506 541 0.91

9 13 0.2 3.2e+03 -0.3 0.0 22 47 540 565 535 572 0.80

10 13 0.68 1.1e+04 -2.0 0.0 23 44 569 590 564 599 0.79

11 13 0.0059 96 4.6 0.4 23 43 625 645 617 652 0.89

12 13 0.0018 29 6.3 0.3 23 44 696 717 689 725 0.87

13 13 0.073 1.2e+03 1.1 0.0 21 52 722 753 717 754 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.26	4.2e+03	-0.6	0.1	23	46	95	118	89	128	0.82
2	13	0.4	6.4e+03	-1.2	0.0	26	43	126	143	122	148	0.88
3	13	4.1e-05	0.66	11.5	0.2	22	47	150	175	141	180	0.86
4	13	0.87	1.4e+04	-2.3	0.0	26	43	319	336	316	348	0.81
5	13	0.82	1.3e+04	-2.3	0.0	23	43	345	365	336	369	0.87
6	13	4.6e-06	0.074	14.6	0.0	21	47	371	397	363	402	0.88
7	13	0.033	5.3e+02	2.2	0.1	4	45	466	507	464	514	0.72
8	13	0.00023	3.7	9.1	0.1	23	43	513	533	506	541	0.91
9	13	0.2	3.2e+03	-0.3	0.0	22	47	540	565	535	572	0.80
10	13	0.68	1.1e+04	-2.0	0.0	23	44	569	590	564	599	0.79
11	13	0.0059	96	4.6	0.4	23	43	625	645	617	652	0.89
12	13	0.0018	29	6.3	0.3	23	44	696	717	689	725	0.87
13	13	0.073	1.2e+03	1.1	0.0	21	52	722	753	717	754	0.87

Sequence Information

Coding Sequence: ATGAGACTTCCGAGGTATTTGAATGAATCTACTTGTGAGTTCTTTTGGGTTCAGGAGGTATCTGAAGATTATATCGATGAAGCAACTGAAATAACAGATGAACCTGTAAAGGATTTAGTAGATTtagaatcaaaaaatgtttcgcAAAGAAAAGAGAAGGATAATAAAGAAGTTATTGCAACTGATATAACAGATGAACCTGTAAGATATCTAGTAGATTTAGAATCAAAGGCAGATTCGCAAAGAAAAGAGAAGTATAATAAAGAAGTTACCGAGGAAAAGACACCATTTCCTTGCGACATCTGTggtaaaacatataaatacaagCGAAGGTTAAATTCACACAAAAATATGCATAATAATGTGAAAACTTTTGCTTGTGATGTATGTGAAAAGAGTTTTTCTAAGGCATATACATTACGTCGACATAAAATTACTCATTCAGAGGACAGACCATACACATGTGATATTTGTGGAAAAGCATTCACACAAAGAGGTCATCTACGGAAGCACATGGAAATTCATAATAATGAGAAATCTTACAAATGCGACATATGCAATAAAGGTTTCAATGTAAAAGAATGTTTGATGAGTCATAAATTAACTCACGTAGTAGAAAAGAAATTCTCTTGTGATACAAAAACACCTGTCGAATCATGTTTTCCAATAATAAAGCTAAGTTATGAAATAGTCTACCAAATATCTATACCCAATATTTTAGACGTTGAAGAAGATTTTGCAGAAATTGAATTAAACCTAAAACAAGAAGTCAAAATTGAAGATGACACAAAAGGTGAGTCCATTTGGGTTCAAGAGGCATCTGAAGATTATATCACTGAAGCAACTGATGTAACAGATGAACCTGTAAAGGATCTTGTAGATTTAGAATCAAAAACAGATTCGCAAACAAAAGAGGAGGATAATAAAGAAGTTACCAAAGAAAAGACACTATTTTCTTGCGACATCTGTggtaaaacatataaaaacaaGCGAAGCTTAAATtcacacaaatataatatacataataatgtgAAACCTTTTGCTTGTGATCTATGTGAAAAGAGTTTTTCTAAGGCATATACATTACGTCAACATAAAATTACTCACTCAGAGGAAAGACCATACACATGTGATATTTGTGGAAAAGCTTTTGCACAAATCGGTAATCTACGGACACACATGGAAATTCATAATAATAAGAAATCTTACAAATGCGATATATGCAACAAAGGATTCAATGTAAAGGATTATTTAATGAGTCATAAATTAACTCACATTGTGGAGAAGAAATTCTCTTGTGATGTTTGTGGAAAATGTTTTACGGATAAGTATGGTTTGAAAAGTCATAAAATGATACATAGTGATGTTAAACGTTATGCGTGTGGCTTGTGTGATAAAAGATTCAGACATTCAAGTTCTTTGCATAACCATAAATTAACTCATTCGAGTGAGAAGCCGTTTGTTTGTGATGTTTGCGGAAAGACGTTTAACGGGAGAGGAAGTTTGAAAAGTCATAAAAATATGCATATGAATATCAAACCGTATACATGTAATATATGTGGAAAAACGTTTAAAAGGTCCAATAATATGCGCCAGCACAGATGGATACACACTGGTGAAAAGTCATATGCTTGTAATATCTGCGGAAAAAAGTTTATACAGAAAAAGAATTTTGATATTCACATGAATAATCATAATAACATACGACCAcatgtgtgtaatttttgtggAAAAGGTTATCAAGAATTCAGTGCTTTAAGACGGCATAAAATGACACACACCGGGCAGAAGCCATTCTCTTGTGATATATGCGGAAAAGGTTTTATCGCTAGAAGCCATTTCAATGATCACAAAAACAGCCACAATAATATAAGACCTTATGTGTGTAAGATATGTGATCAGAGCTTCTGTCAGTTGAAGACTTTACGTCGGCATAGCTTCAAGCatgaaaaacatgaaaaacATGACAAACATGACAAACATGGCAAACATGAGAAACAATTTGTGTGTGATACCTGTGGTAAGGCATATAAACACAAATACGATTTAAGCAAACATATAACTACCCACACTAAAGCAAATTTGAAACCTTATATGTGCAATATATGTGTTAAAGGGTTTACGCAGAATCGTTCTTTACAGCGACATCGGTTAACTCATGCTAGAGAGAAGCCTTTCTCTTGTGATGTGTGCGGAAAAGAATTTCTACAAAAATGTGATTTAGACACACATATTAACATTCACAATGATACAAAACCGTTACCACTTTGCACGTAA
Protein Sequence: MRLPRYLNESTCEFFWVQEVSEDYIDEATEITDEPVKDLVDLESKNVSQRKEKDNKEVIATDITDEPVRYLVDLESKADSQRKEKYNKEVTEEKTPFPCDICGKTYKYKRRLNSHKNMHNNVKTFACDVCEKSFSKAYTLRRHKITHSEDRPYTCDICGKAFTQRGHLRKHMEIHNNEKSYKCDICNKGFNVKECLMSHKLTHVVEKKFSCDTKTPVESCFPIIKLSYEIVYQISIPNILDVEEDFAEIELNLKQEVKIEDDTKGESIWVQEASEDYITEATDVTDEPVKDLVDLESKTDSQTKEEDNKEVTKEKTLFSCDICGKTYKNKRSLNSHKYNIHNNVKPFACDLCEKSFSKAYTLRQHKITHSEERPYTCDICGKAFAQIGNLRTHMEIHNNKKSYKCDICNKGFNVKDYLMSHKLTHIVEKKFSCDVCGKCFTDKYGLKSHKMIHSDVKRYACGLCDKRFRHSSSLHNHKLTHSSEKPFVCDVCGKTFNGRGSLKSHKNMHMNIKPYTCNICGKTFKRSNNMRQHRWIHTGEKSYACNICGKKFIQKKNFDIHMNNHNNIRPHVCNFCGKGYQEFSALRRHKMTHTGQKPFSCDICGKGFIARSHFNDHKNSHNNIRPYVCKICDQSFCQLKTLRRHSFKHEKHEKHDKHDKHGKHEKQFVCDTCGKAYKHKYDLSKHITTHTKANLKPYMCNICVKGFTQNRSLQRHRLTHAREKPFSCDVCGKEFLQKCDLDTHINIHNDTKPLPLCT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00144874;
90% Identity: iTF_00144874;
80% Identity: iTF_00144874;