Basic Information

Insect: Apodemia mormo
Gene Symbol: -
Assembly: GCA_036924255.1
Location: JAUPFN010000040.1:606576-626529[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 3.5e-05 0.0048 18.6 1.9 1 23 97 119 97 119 0.98

2 19 4.7e-06 0.00065 21.4 1.0 1 23 125 147 125 147 0.97

3 19 1.3e-08 1.8e-06 29.4 1.2 1 23 153 175 153 175 0.98

4 19 9.8e-05 0.014 17.2 2.6 1 23 181 203 181 203 0.99

5 19 1.7e-05 0.0024 19.6 1.9 1 23 318 341 318 341 0.92

6 19 2.3e-05 0.0032 19.2 1.0 1 23 347 369 347 369 0.97

7 19 2.9e-07 4e-05 25.2 0.1 1 23 375 397 375 397 0.98

8 19 1e-05 0.0014 20.3 1.1 1 23 403 425 403 425 0.99

9 19 1.6e-06 0.00022 22.9 2.6 1 23 431 453 431 453 0.98

10 19 6.2e-05 0.0085 17.9 5.0 1 23 459 481 459 481 0.97

11 19 4.4e-06 0.00061 21.5 0.5 1 23 487 509 487 509 0.98

12 19 2.6e-06 0.00036 22.2 1.2 1 20 515 534 515 537 0.94

13 19 2e-06 0.00028 22.5 0.9 1 23 543 565 543 565 0.97

14 19 0.00076 0.1 14.4 2.3 1 23 571 593 571 593 0.97

15 19 7.2e-05 0.01 17.6 1.5 1 23 599 621 599 621 0.98

16 19 0.00022 0.03 16.1 5.0 1 23 627 649 627 649 0.96

17 19 2.1e-06 0.00029 22.5 2.5 1 23 668 690 668 690 0.98

18 19 3.6e-06 0.00049 21.8 1.4 1 23 698 720 698 720 0.98

19 19 0.001 0.14 14.0 0.9 1 23 726 748 726 748 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	3.5e-05	0.0048	18.6	1.9	1	23	97	119	97	119	0.98
2	19	4.7e-06	0.00065	21.4	1.0	1	23	125	147	125	147	0.97
3	19	1.3e-08	1.8e-06	29.4	1.2	1	23	153	175	153	175	0.98
4	19	9.8e-05	0.014	17.2	2.6	1	23	181	203	181	203	0.99
5	19	1.7e-05	0.0024	19.6	1.9	1	23	318	341	318	341	0.92
6	19	2.3e-05	0.0032	19.2	1.0	1	23	347	369	347	369	0.97
7	19	2.9e-07	4e-05	25.2	0.1	1	23	375	397	375	397	0.98
8	19	1e-05	0.0014	20.3	1.1	1	23	403	425	403	425	0.99
9	19	1.6e-06	0.00022	22.9	2.6	1	23	431	453	431	453	0.98
10	19	6.2e-05	0.0085	17.9	5.0	1	23	459	481	459	481	0.97
11	19	4.4e-06	0.00061	21.5	0.5	1	23	487	509	487	509	0.98
12	19	2.6e-06	0.00036	22.2	1.2	1	20	515	534	515	537	0.94
13	19	2e-06	0.00028	22.5	0.9	1	23	543	565	543	565	0.97
14	19	0.00076	0.1	14.4	2.3	1	23	571	593	571	593	0.97
15	19	7.2e-05	0.01	17.6	1.5	1	23	599	621	599	621	0.98
16	19	0.00022	0.03	16.1	5.0	1	23	627	649	627	649	0.96
17	19	2.1e-06	0.00029	22.5	2.5	1	23	668	690	668	690	0.98
18	19	3.6e-06	0.00049	21.8	1.4	1	23	698	720	698	720	0.98
19	19	0.001	0.14	14.0	0.9	1	23	726	748	726	748	0.98

Sequence Information

Coding Sequence: ATGAGACTTCCGAGGTATTTGAATGAATCTACTTGTGAGTTCTTTTGGGTTCAGGAGGTATCTGAAGATTATATCGATGAAGCAACTGAAATAACAGATGAACCTGTAAAGGATTTAGTAGATTtagaatcaaaaaatgtttcgcAAAGAAAAGAGAAGGATAATAAAGAAGTTATTGCAACTGATATAACAGATGAACCTGTAAGATATCTAGTAGATTTAGAATCAAAGGCAGATTCGCAAAGAAAAGAGAAGTATAATAAAGAAGTTACCGAGGAAAAGACACCATTTCCTTGCGACATCTGTggtaaaacatataaatacaagCGAAGGTTAAATTCACACAAAAATATGCATAATAATGTGAAAACTTTTGCTTGTGATGTATGTGAAAAGAGTTTTTCTAAGGCATATACATTACGTCGACATAAAATTACTCATTCAGAGGACAGACCATACACATGTGATATTTGTGGAAAAGCATTCACACAAAGAGGTCATCTACGGAAGCACATGGAAATTCATAATAATGAGAAATCTTACAAATGCGACATATGCAATAAAGGTTTCAATGTAAAAGAATGTTTGATGAGTCATAAATTAACTCACGTAGTAGAAAAGAAATTCTCTTGTGATACAAAAACACCTGTCGAATCATGTTTTCCAATAATAAAGCTAAGTTATGAAATAGTCTACCAAATATCTATACCCAATATTTTAGACGTTGAAGAAGATTTTGCAGAAATTGAATTAAACCTAAAACAAGAAGTCAAAATTGAAGATGACACAAAAGGTGAGTCCATTTGGGTTCAAGAGGCATCTGAAGATTATATCACTGAAGCAACTGATGTAACAGATGAACCTGTAAAGGATCTTGTAGATTTAGAATCAAAAACAGATTCGCAAACAAAAGAGGAGGATAATAAAGAAGTTACCAAAGAAAAGACACTATTTTCTTGCGACATCTGTggtaaaacatataaaaacaaGCGAAGCTTAAATtcacacaaatataatatacataataatgtgAAACCTTTTGCTTGTGATCTATGTGAAAAGAGTTTTTCTAAGGCATATACATTACGTCAACATAAAATTACTCACTCAGAGGAAAGACCATACACATGTGATATTTGTGGAAAAGCTTTTGCACAAATCGGTAATCTACGGACACACATGGAAATTCATAATAATAAGAAATCTTACAAATGCGATATATGCAACAAAGGATTCAATGTAAAGGATTATTTAATGAGTCATAAATTAACTCACATTGTGGAGAAGAAATTCTCTTGTGATGTTTGTGGAAAATGTTTTACGGATAAGTATGGTTTGAAAAGTCATAAAATGATACATAGTGATGTTAAACGTTATGCGTGTGGCTTGTGTGATAAAAGATTCAGACATTCAAGTTCTTTGCATAACCATAAATTAACTCATTCGAGTGAGAAGCCGTTTGTTTGTGATGTTTGCGGAAAGACGTTTAACGGGAGAGGAAGTTTGAAAAGTCATAAAAATATGCATATGAATATCAAACCGTATACATGTAATATATGTGGAAAAACGTTTAAAAGGTCCAATAATATGCGCCAGCACAGATGGATACACACTGGTGAAAAGTCATATGCTTGTAATATCTGCGGAAAAAAGTTTATACAGAAAAAGAATTTTGATATTCACATGAATAATCATAATAACATACGACCAcatgtgtgtaatttttgtggAAAAGGTTATCAAGAATTCAGTGCTTTAAGACGGCATAAAATGACACACACCGGGCAGAAGCCATTCTCTTGTGATATATGCGGAAAAGGTTTTATCGCTAGAAGCCATTTCAATGATCACAAAAACAGCCACAATAATATAAGACCTTATGTGTGTAAGATATGTGATCAGAGCTTCTGTCAGTTGAAGACTTTACGTCGGCATAGCTTCAAGCatgaaaaacatgaaaaacATGACAAACATGACAAACATGGCAAACATGAGAAACAATTTGTGTGTGATACCTGTGGTAAGGCATATAAACACAAATACGATTTAAGCAAACATATAACTACCCACACTAAAGCAAATTTGAAACCTTATATGTGCAATATATGTGTTAAAGGGTTTACGCAGAATCGTTCTTTACAGCGACATCGGTTAACTCATGCTAGAGAGAAGCCTTTCTCTTGTGATGTGTGCGGAAAAGAATTTCTACAAAAATGTGATTTAGACACACATATTAACATTCACAATGATACAAAACCGTTACCACTTTGCACGTAA
Protein Sequence: MRLPRYLNESTCEFFWVQEVSEDYIDEATEITDEPVKDLVDLESKNVSQRKEKDNKEVIATDITDEPVRYLVDLESKADSQRKEKYNKEVTEEKTPFPCDICGKTYKYKRRLNSHKNMHNNVKTFACDVCEKSFSKAYTLRRHKITHSEDRPYTCDICGKAFTQRGHLRKHMEIHNNEKSYKCDICNKGFNVKECLMSHKLTHVVEKKFSCDTKTPVESCFPIIKLSYEIVYQISIPNILDVEEDFAEIELNLKQEVKIEDDTKGESIWVQEASEDYITEATDVTDEPVKDLVDLESKTDSQTKEEDNKEVTKEKTLFSCDICGKTYKNKRSLNSHKYNIHNNVKPFACDLCEKSFSKAYTLRQHKITHSEERPYTCDICGKAFAQIGNLRTHMEIHNNKKSYKCDICNKGFNVKDYLMSHKLTHIVEKKFSCDVCGKCFTDKYGLKSHKMIHSDVKRYACGLCDKRFRHSSSLHNHKLTHSSEKPFVCDVCGKTFNGRGSLKSHKNMHMNIKPYTCNICGKTFKRSNNMRQHRWIHTGEKSYACNICGKKFIQKKNFDIHMNNHNNIRPHVCNFCGKGYQEFSALRRHKMTHTGQKPFSCDICGKGFIARSHFNDHKNSHNNIRPYVCKICDQSFCQLKTLRRHSFKHEKHEKHDKHDKHGKHEKQFVCDTCGKAYKHKYDLSKHITTHTKANLKPYMCNICVKGFTQNRSLQRHRLTHAREKPFSCDVCGKEFLQKCDLDTHINIHNDTKPLPLCT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00145210;
90% Identity: iTF_00145210;
80% Identity: iTF_00145210;