Basic Information

Insect: Apocrypta bakeri
Gene Symbol: -
Assembly: GCA_018906985.1
Location: JACCIA010000011.1:4625322-4627166[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8.9 6.4e+02 0.9 0.4 5 23 123 141 119 141 0.83

2 15 6.6e-05 0.0048 17.1 1.5 2 23 146 167 146 167 0.98

3 15 5.9e-06 0.00043 20.4 2.5 2 23 174 195 173 195 0.97

4 15 6.3e-07 4.5e-05 23.4 0.4 1 23 229 251 229 251 0.98

5 15 0.0011 0.079 13.2 0.3 1 20 257 276 257 279 0.93

6 15 3.1e-06 0.00023 21.3 2.3 1 23 285 307 285 307 0.97

7 15 1.1e-06 7.7e-05 22.7 1.1 1 23 313 335 313 335 0.96

8 15 5e-05 0.0036 17.5 0.4 1 23 341 363 341 363 0.98

9 15 1.8e-05 0.0013 18.9 7.2 1 23 369 391 369 391 0.97

10 15 1.9e-08 1.3e-06 28.3 0.6 1 23 396 418 396 418 0.97

11 15 0.00028 0.02 15.1 0.2 1 23 424 446 424 446 0.97

12 15 5.4e-06 0.00039 20.5 8.1 1 23 452 474 452 474 0.97

13 15 1.9e-07 1.3e-05 25.1 1.7 1 23 480 502 480 502 0.98

14 15 1.3e-05 0.00092 19.3 0.7 1 23 508 530 508 530 0.98

15 15 6.4e-05 0.0046 17.1 1.9 2 23 537 559 537 559 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8.9	6.4e+02	0.9	0.4	5	23	123	141	119	141	0.83
2	15	6.6e-05	0.0048	17.1	1.5	2	23	146	167	146	167	0.98
3	15	5.9e-06	0.00043	20.4	2.5	2	23	174	195	173	195	0.97
4	15	6.3e-07	4.5e-05	23.4	0.4	1	23	229	251	229	251	0.98
5	15	0.0011	0.079	13.2	0.3	1	20	257	276	257	279	0.93
6	15	3.1e-06	0.00023	21.3	2.3	1	23	285	307	285	307	0.97
7	15	1.1e-06	7.7e-05	22.7	1.1	1	23	313	335	313	335	0.96
8	15	5e-05	0.0036	17.5	0.4	1	23	341	363	341	363	0.98
9	15	1.8e-05	0.0013	18.9	7.2	1	23	369	391	369	391	0.97
10	15	1.9e-08	1.3e-06	28.3	0.6	1	23	396	418	396	418	0.97
11	15	0.00028	0.02	15.1	0.2	1	23	424	446	424	446	0.97
12	15	5.4e-06	0.00039	20.5	8.1	1	23	452	474	452	474	0.97
13	15	1.9e-07	1.3e-05	25.1	1.7	1	23	480	502	480	502	0.98
14	15	1.3e-05	0.00092	19.3	0.7	1	23	508	530	508	530	0.98
15	15	6.4e-05	0.0046	17.1	1.9	2	23	537	559	537	559	0.96

Sequence Information

Coding Sequence: ATGAACCGGCAATGGGCCAAACGTAAGTCCAGGGATGTAAGATCACTCAGTGACTCTCAGGTTATGGATGAAAATATAGTAAGCGTTGTGCTTAAGGAAGAACCTGGAGAGAAATTTGAGCCTAGCTACATGGAGGACATCTGCTTAGGGACCTTCGATAAGGTCTTTCAGCCAATTGATCAGCATGAGGTGGAATTCCCCGATGATATGGTAAAACTGGAATTGGATGGGGATAGTAGCCATCATCATTGGGCAGCTCAATTAGCAAGCGCTACATTATCTGAAAATGGAGATTACAGTGGACAGGGAGATTATCACTTCCTGAATTCAAGTGCAGCGCAAAAGTTTTATAAAATACAGTGCATATTGTGTAAGAAATGGTTTTTAAACAATGACTCTATGGTCACTCACTTGAAAATGCATTGCACCGGAAATACTTGTGAAGTATGTCATCAAAGTTTTATGGACAATGCTGGTCTACATGCTCATATGTTAACTCACGTTGGTATGAGTCCAGTAGAGTGTACGATTTGTCAAAAAAGGTTTGCTTACAAGTGGTGTTTGCGGAACCATATGCAAACCCATATGCAAAACAAACAATTAGAGTATGACAGTCGACAGCAAGCTTTTCTGAAAAGGTATGGTTCAAACAATGATCATATGATACGTGATGAAGAAAAGCCCTACTCCTGCCAAATTTGTCAGGCATCCTTTAGAGAAAAAGGAAACTTAAATCGTCACATGCTCATTCACACTGGTGAAAAACCTTACAGGTGTGAAGTATGCTTTGCTTCTTTCCGTGAAAAAGCAAAACTTAACATGCACATGCCAGTTCACACTGGTCACAAGCAATTCAAGTGTACTATGTGTCACCGATCATTTGCTCAAAAAACTGCCTTAAGCAATCACATGTTGGCACACAGTGGGGAAAAACCTCATGCCTGCAATATTTGTGAGAAGACATATAAAAGAAAGTCAGAATTGATTAGGCATGCAATGATTCATACTGGAGAACGACCTTACGAATGTCAAGAGTGTTTGATGACTTTCAGAGAAAAAGCAAAGTTAAATTCTCATATGCTGGTGCATACAGGTGAGAAACCACATGAATGTCACATATGTCATAAAGCATGTGCTCGAAAATCAGATTTGAACAGCCATATGCTTTCGCACACCGGAGGCCAATATGATTGTAAAGTTTGTGATAAAATTTTCACACGAAAATCAGATTTGAATAGACATATTTTGGTTCATACTGGTGAAAAACCTTATGCTTGTGATTATTGTGAAATGGCTTTTCGAGAAAAGACAAGACTGAACTCACACATGGTTGTTCACACAGGTGATAAAAGACACATGTGTCACATTTGCCACAAAAGTTTTAGAGAAAAATCAATGCTCCGAAAACATATGCTTAGCCATACTGGGGATAGACCATTTGAATGTTATGTTTGTCAGAAATCATTTACTCAAAAATCTACACTTAACAGTCACATTCTTACTCACACAACAGAAGCGTCATACGAATGCACCATATGCAGGAAAGTCTACCGCGAAAGAACAGCCCTGAGGAAACATCTGATATCTCATACCGCGGACAAAAATAATGAATGCCCCATTTGTTTAAAGAAGTTTACACACAAAACTGCGCTAAGTAGTCATATAACGACGACTCACTCTTTGTAA
Protein Sequence: MNRQWAKRKSRDVRSLSDSQVMDENIVSVVLKEEPGEKFEPSYMEDICLGTFDKVFQPIDQHEVEFPDDMVKLELDGDSSHHHWAAQLASATLSENGDYSGQGDYHFLNSSAAQKFYKIQCILCKKWFLNNDSMVTHLKMHCTGNTCEVCHQSFMDNAGLHAHMLTHVGMSPVECTICQKRFAYKWCLRNHMQTHMQNKQLEYDSRQQAFLKRYGSNNDHMIRDEEKPYSCQICQASFREKGNLNRHMLIHTGEKPYRCEVCFASFREKAKLNMHMPVHTGHKQFKCTMCHRSFAQKTALSNHMLAHSGEKPHACNICEKTYKRKSELIRHAMIHTGERPYECQECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLSHTGGQYDCKVCDKIFTRKSDLNRHILVHTGEKPYACDYCEMAFREKTRLNSHMVVHTGDKRHMCHICHKSFREKSMLRKHMLSHTGDRPFECYVCQKSFTQKSTLNSHILTHTTEASYECTICRKVYRERTALRKHLISHTADKNNECPICLKKFTHKTALSSHITTTHSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01469925;
90% Identity: iTF_01037250; iTF_01487234; iTF_00305763; iTF_00845382; iTF_01035654; iTF_01036454; iTF_01524168; iTF_00286640; iTF_00708082; iTF_00969012; iTF_00287477; iTF_00708661; iTF_01380117; iTF_01219226; iTF_01190652;
80% Identity: -