Basic Information

Insect: Pleistodontes nigriventris
Gene Symbol: -
Assembly: GCA_903653215.1
Location: CAHLDJ010001825.1:37423-39624[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.18 57 6.3 0.7 2 23 99 120 98 120 0.97

2 15 0.00024 0.076 15.3 1.6 2 23 125 146 125 146 0.98

3 15 5.6e-06 0.0018 20.4 2.5 2 23 153 174 152 174 0.97

4 15 1.7e-07 5.3e-05 25.3 0.9 1 23 208 230 208 230 0.98

5 15 0.00028 0.09 15.1 0.2 1 20 236 255 236 258 0.94

6 15 1.2e-06 0.00038 22.6 2.3 1 23 264 286 264 286 0.97

7 15 7.6e-07 0.00024 23.2 1.8 1 23 292 314 292 314 0.96

8 15 4.7e-05 0.015 17.5 0.4 1 23 320 342 320 342 0.98

9 15 1.7e-05 0.0053 19.0 7.2 1 23 348 370 348 370 0.97

10 15 1.7e-08 5.6e-06 28.3 0.6 1 23 375 397 375 397 0.97

11 15 7.8e-05 0.025 16.8 0.3 1 23 403 425 403 425 0.97

12 15 1.1e-05 0.0034 19.6 6.7 1 23 431 453 431 453 0.97

13 15 8.3e-07 0.00027 23.1 1.1 1 23 459 481 459 481 0.99

14 15 1.1e-05 0.0036 19.5 0.6 1 23 487 509 487 509 0.99

15 15 5.6e-05 0.018 17.3 1.8 2 23 516 538 516 538 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.18	57	6.3	0.7	2	23	99	120	98	120	0.97
2	15	0.00024	0.076	15.3	1.6	2	23	125	146	125	146	0.98
3	15	5.6e-06	0.0018	20.4	2.5	2	23	153	174	152	174	0.97
4	15	1.7e-07	5.3e-05	25.3	0.9	1	23	208	230	208	230	0.98
5	15	0.00028	0.09	15.1	0.2	1	20	236	255	236	258	0.94
6	15	1.2e-06	0.00038	22.6	2.3	1	23	264	286	264	286	0.97
7	15	7.6e-07	0.00024	23.2	1.8	1	23	292	314	292	314	0.96
8	15	4.7e-05	0.015	17.5	0.4	1	23	320	342	320	342	0.98
9	15	1.7e-05	0.0053	19.0	7.2	1	23	348	370	348	370	0.97
10	15	1.7e-08	5.6e-06	28.3	0.6	1	23	375	397	375	397	0.97
11	15	7.8e-05	0.025	16.8	0.3	1	23	403	425	403	425	0.97
12	15	1.1e-05	0.0034	19.6	6.7	1	23	431	453	431	453	0.97
13	15	8.3e-07	0.00027	23.1	1.1	1	23	459	481	459	481	0.99
14	15	1.1e-05	0.0036	19.5	0.6	1	23	487	509	487	509	0.99
15	15	5.6e-05	0.018	17.3	1.8	2	23	516	538	516	538	0.96

Sequence Information

Coding Sequence: ATGGATGAAAATATTGTAAGCGTTGTACTCAAGGAAGAACCTGGAGAAAAATACGAACCAAACTACATGGAGGACATCTGTTTGGGAACTTTCGATAAGGTGTTTCAGCCCATCGACCATCATGAGGTGGACTTTCCTGATGACATGGTAAAATTGGAGTTAGATGGAGAAAGTAGCCATCATCATTGGGCAGCTCAGTTAGCAAGTGCAACTTTATCTGATAATGGAGAATATGGAGGGCAAGGTGACCATCACTTCCTTAACACGAGTGCGGcgcaaaagttttataaaattcagtgtACCCTCTGCAAgaaatggtttttaaataatgattctaTGGTGACgcatttaaaaatgcattgtaGTGGTAATACTTGTGAAGTTTGTCATCAAAATTTTATGGATAATGCAGGTTTACATGCCCACATGTTAACCCATGTTGGTATGAGTCCAGTAGAATGTACAATATGTCAAAAAAGATTTGCCTATAAGTGGTGTTTACGTAATCATATGCAAACTCATATGCCCAACAAGCAATTTGAGTACGACAGCTTACAGCAAGCTTTTTTGAAAAGATATGGTCAAAATAATGACCACATGATACGTGATGAAGAAAGACCTTATACGTGTCAAATTTGTCAGACATCGTTTAgagaaaaaggaaatttaaatcGTCACATGTTAATTCATACTGGTGAGAAACCCTACAAATGTGAAATATGCTTTGCTTCATTTCGTGAGAAAGCTAAATTAAACATTCATATGCCAGTTCATACTGGTCATAAGCAATTTAAGTGTACCATGTGTCATCGATCATTTGCACAGAAAACtgcattaaataatcatatgcTAGCACATAGTGGAGAAAAACCTCATGCTTGTAATATCTGTGagaaaacttataaaagaaaatctgaATTAATAAGGCATACAATGATTCACACTGGGGAAAGACCTTATGAATGTCAAGAATGCTTAATGACTTTTAGAGAAAAGGCAAAGTTGAATTCTCATATGTTGGTTCATACAGGGGAAAAACCACATGAATGTCATATATGTCACAAAGCTTGTGCTCGAAAATCAGATTTAAATAGTCACATGCTCTCACATACTGGAGGACAGTATGATTGTAAAGTTTGTGATAAGATTTTCACTAGAAAGTCGGACTTAAATAGACACATTTTGGTTCATACTGGAGAAAAACCTTATGCTTGTGAATATTGCGATATGGCTTTTCGAGAAAAGACAAGACTGAATTCACATATGGTCATTCATACAGGAGATAAAAGGCATATTTGTCATATTTGTCATAAGGGCTTCCGAGAAAAATCAATGCTAAGAAAACATATGTTAAGTCATACTGGTGATCGTCCTTACGAATGTTATGTATGTCAAAAAGCGTTTACACAAAAGACAACACTTAATAGCCACATTCTAACACACACAACAGAAGCATCCTATGAATGCACCATATGTAGAAAAGTTTATCGAGAAAGAATGGCGTTACGAAAACATCTTATAACACATACTGCagacaaaaataatgaatgccctatttgtttgaaaaaattcactCATAAGACGGCGCTAAGTAGTCATATAACAACATCTCATTCTTTGTAA
Protein Sequence: MDENIVSVVLKEEPGEKYEPNYMEDICLGTFDKVFQPIDHHEVDFPDDMVKLELDGESSHHHWAAQLASATLSDNGEYGGQGDHHFLNTSAAQKFYKIQCTLCKKWFLNNDSMVTHLKMHCSGNTCEVCHQNFMDNAGLHAHMLTHVGMSPVECTICQKRFAYKWCLRNHMQTHMPNKQFEYDSLQQAFLKRYGQNNDHMIRDEERPYTCQICQTSFREKGNLNRHMLIHTGEKPYKCEICFASFREKAKLNIHMPVHTGHKQFKCTMCHRSFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMIHTGERPYECQECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLSHTGGQYDCKVCDKIFTRKSDLNRHILVHTGEKPYACEYCDMAFREKTRLNSHMVIHTGDKRHICHICHKGFREKSMLRKHMLSHTGDRPYECYVCQKAFTQKTTLNSHILTHTTEASYECTICRKVYRERMALRKHLITHTADKNNECPICLKKFTHKTALSSHITTSHSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01469925;
90% Identity: iTF_00144033;
80% Identity: -