Basic Information

Insect: Ceratosolen solmsi
Gene Symbol: -
Assembly: GCA_000503995.1
Location: NW:8883259-8886880[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.13 7.9 6.3 0.7 2 23 99 120 98 120 0.97

2 15 0.00011 0.0065 16.0 1.1 2 23 125 146 125 146 0.97

3 15 4.1e-06 0.00024 20.4 2.5 2 23 153 174 152 174 0.97

4 15 1.2e-07 7.2e-06 25.3 0.9 1 23 208 230 208 230 0.98

5 15 0.00021 0.012 15.1 0.2 1 20 236 255 236 258 0.94

6 15 8.6e-07 5.2e-05 22.6 2.3 1 23 264 286 264 286 0.97

7 15 5.5e-07 3.3e-05 23.2 1.8 1 23 292 314 292 314 0.96

8 15 3.4e-05 0.002 17.5 0.4 1 23 320 342 320 342 0.98

9 15 1.2e-05 0.00072 19.0 7.2 1 23 348 370 348 370 0.97

10 15 1.3e-08 7.6e-07 28.3 0.6 1 23 375 397 375 397 0.97

11 15 5.7e-05 0.0034 16.8 0.3 1 23 403 425 403 425 0.97

12 15 7.8e-06 0.00047 19.6 6.7 1 23 431 453 431 453 0.97

13 15 6e-07 3.6e-05 23.1 1.1 1 23 459 481 459 481 0.99

14 15 5.1e-05 0.0031 17.0 0.6 1 23 487 509 487 509 0.98

15 15 0.00021 0.013 15.0 4.0 2 23 516 538 516 538 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.13	7.9	6.3	0.7	2	23	99	120	98	120	0.97
2	15	0.00011	0.0065	16.0	1.1	2	23	125	146	125	146	0.97
3	15	4.1e-06	0.00024	20.4	2.5	2	23	153	174	152	174	0.97
4	15	1.2e-07	7.2e-06	25.3	0.9	1	23	208	230	208	230	0.98
5	15	0.00021	0.012	15.1	0.2	1	20	236	255	236	258	0.94
6	15	8.6e-07	5.2e-05	22.6	2.3	1	23	264	286	264	286	0.97
7	15	5.5e-07	3.3e-05	23.2	1.8	1	23	292	314	292	314	0.96
8	15	3.4e-05	0.002	17.5	0.4	1	23	320	342	320	342	0.98
9	15	1.2e-05	0.00072	19.0	7.2	1	23	348	370	348	370	0.97
10	15	1.3e-08	7.6e-07	28.3	0.6	1	23	375	397	375	397	0.97
11	15	5.7e-05	0.0034	16.8	0.3	1	23	403	425	403	425	0.97
12	15	7.8e-06	0.00047	19.6	6.7	1	23	431	453	431	453	0.97
13	15	6e-07	3.6e-05	23.1	1.1	1	23	459	481	459	481	0.99
14	15	5.1e-05	0.0031	17.0	0.6	1	23	487	509	487	509	0.98
15	15	0.00021	0.013	15.0	4.0	2	23	516	538	516	538	0.96

Sequence Information

Coding Sequence: ATGgatgaaaatattgtaagcgTTGTGCTCAAGGAAGAACCTGGAGAAAAATACGAACCAAACTACATGGAGGACATTTGTTTGGGAACTTTTGATAAGGTCTTTCAACCCATCGACCATCATGAGGTGGATTTTCCTGATGACatggtaAAACTAGAATTAGATGGAGAAAGTAGCCATCATCACTGGGCAGCTCAATTAGCAAGTGCAACTTTATCTGATAATGGAGAATATGGTGGACAAGGTGACCATCACTTCCTTAATACAAGTGCAGcacaaaagttttataaaattcagtgtacattatgcaaaaaatggtttttaaataatgattctaTGGTGacacatttaaaaatgcacTGTAGTGGCAATACTTGTGAAGTTTgtcatcaaaattttattgataatgcaGGCTTACATGCACATATGTTATCTCATGTTGGTATGAGTCCAGTAGAATGTACAATATGTCAAAAAAGATTTGCATACAAATGGTGTTTACGTAATCACATGCAAACTCATATGCcaaataaacaattagaaTATGATAGCTTACAACAAGCTTTTTTGAAAAGATATGGTCAAAATAATGATCATATGATACGTGATGAAGAAAGGCCTTACACATGTCAAATTTGTCAAACATCATTTAGggaaaaaggaaatttaaatCGCCATATGTTAATTCATACTGGTGAAAAACCTTACAAATGTGAAATATGTTTTGCTTCATTTCGTGAAAaagctaaattaaatattcatatgccAGTTCATACTGGTCATAAGCAATTCAAATGTACTATGTGTCATCGGTCATTTGCCCAAAAAActgcattaaataatcatatgctAGCACACAGTGGAGAAAAACCCCATGCTTGcaatatttgtgaaaaaacttataaaagaaAGTCTGAGTTAATTAGGCATACAATGATCCATACTGGAGAAAGACCATATGAATGTCAGGAATGTTTAATGACTTTTAgagaaaaagcaaaattaaattctcataTGCTGGTACACACAGGTGAAAAACCACATGAATGTCATATATGTCACAAAGCATGTGCTCGTAAATCAGATTTAAATAGTCATATGCTGTCACATACTGGAGGACAATATGACTGTAAAGtttgtgataaaatttttaccagGAAATCAGACTTAAATAGACATATTTTGGTTCATACTGGAGAAAAACCTTATGCATGTGAATATTGCGATATGGCTTTTCGAGAAAAGACAAGACTAAATTCACATATGGTGATTCATACAGGAGATAAAAGGCATATTTGTCATATTTGTCATAAGGGTTTCCGAGAAAAATCAATGCTACGCAAACATATGCTAAGTCATACTGGAGATCGACCGTACGAATGTTATGTTTGTCAAAAGGCATTTACTCAAAAAACAACTCTTAACAGCCATATTTTAACACACACAGCAGAAGCATCTTATGAATGCACTATATGTAGAAAAGTTTACAGAGAAAGATTGGCATTGCGAAAGCATCTTGTAACACATACTACagacaaaaataatgaatgtcctatttgtttaaaaaaattcactcaTAAAACGGCGTTAAGTAGTCATATAACAACGTGTCATTCTTTGTAA
Protein Sequence: MDENIVSVVLKEEPGEKYEPNYMEDICLGTFDKVFQPIDHHEVDFPDDMVKLELDGESSHHHWAAQLASATLSDNGEYGGQGDHHFLNTSAAQKFYKIQCTLCKKWFLNNDSMVTHLKMHCSGNTCEVCHQNFIDNAGLHAHMLSHVGMSPVECTICQKRFAYKWCLRNHMQTHMPNKQLEYDSLQQAFLKRYGQNNDHMIRDEERPYTCQICQTSFREKGNLNRHMLIHTGEKPYKCEICFASFREKAKLNIHMPVHTGHKQFKCTMCHRSFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMIHTGERPYECQECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLSHTGGQYDCKVCDKIFTRKSDLNRHILVHTGEKPYACEYCDMAFREKTRLNSHMVIHTGDKRHICHICHKGFREKSMLRKHMLSHTGDRPYECYVCQKAFTQKTTLNSHILTHTAEASYECTICRKVYRERLALRKHLVTHTTDKNNECPICLKKFTHKTALSSHITTCHSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01469925;
90% Identity: iTF_00144033;
80% Identity: -