Abak009560.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apocrypta bakeri
Gene Symbol
PAXBP1
Assembly
GCA_018906985.1
Location
JACCIA010000011.1:4908343-4914308[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.6e-29 6.6e-25 88.0 1.5 2 272 541 750 540 752 0.92

Sequence Information

Coding Sequence
ATGTCTTTGTTCAATAAACCCAAAAGAAATATCCGCCGTCGGCATTTCAACGATGAAGAAGAAGACAATGAAAACAGATCAATGGAAACCGAGGACATGCAAATCCTTAGAAATAAAGTTAAAAAGAAGGATAAGCCAAAACAAACTCTGCTTAGCTTTGGGGATGACTTGGATGAAGCTGATGAGGGTGAAGTTTTTAAAGTGAAGAAATCATCAAGAAGCAGAAGGCTGATGAAACAACTTGACCAGGAGAGAAAGAAAAAGAAAGGTGAAGAGAAAATGCAAGTGGATTCTGACTCAACGATCATGTCTAATATGCAGGAAAAAGATTTAGAAATTAAAACAGATGATCTAGTAGTCAAGATAAAAAATACTGGTCCAATGATTTTAAATGGAAGGGATGCTCTGACAGCTGGTAAGAATGACTATAGTTCAGAAGATGAAGTTGACAGCAACCAAGGACATAAATTTCAAAATAAATCGGACAGATCAGAAAATATGAAATTTTTTCTTCAAAGTGGTTGTATACCAGATGCAGCAATGATTCATGCAGCAAGAAAACGTAGACAAAAGGCTAGAGAGTTAGGCCATGATTACATTCCAGTAGAAGAACAAGGTGATGATAAGGGAACTTGCAGATTAGTACGAGAAGAAGATCATGATCGCAGTGATGATGAAGATTCTCAAGAGAGAATAAATATGACTGTTGATACAGAGGCTTTAGACAAGGAAAAAAGACGACAAGCTTTTCTAGATTCTCAAACTCCAGTAGCAAGAGTGTCTGATGAAGAAAGTGAACCAGAAGAAGAAGAATGGGAAGTGCAACAAATTAGAAAAGGTGTTACTGGAGCTCAGATTGCAGCTGCTCATCAAGATTCCATTGTGCAATATAACACATTGGGAATTGGTCCAAGTCACATGATTGATTCCGGTATATCAATGATGACGTCTACTATGATACCAGCAGCTCCTCCACCTCCTATGATACAACCACCAGATCCTACAAAATGCGTACCAATTACTGCAGAAGAAGTTTTAAATAAAATGCGCGAAAGGCTAAACAATTTACGAGAAGTTCATCGCCGACACGAATTAAATTATGATGCTGTAATCCACGAATTGCTTCAAAGTAAAAAGGAATTGGAAGACGGTGAAAACCGAGCACCAGAGATGGCTCAACGCTACAAATATTACCAAGAGTTGCGTGGGTATGTCACTGACTTGGTAGAGTGTCTTAATGAGAAGCTGCCTAAGGTTGCTGCGCTGGAATCTCGTTGGGTAGAGTTGTATGGCGACAGATCGATGGAACTAATGGAAAGAAGAAGACAAGATACAAGAGATCAAGCTGAAGAAGTGACAAGTGCATCAAGGGGGCCAGTTTTAAGAAGAGGTCCAGAAGACGAAGCGCGTATGAGAAGAGCCACAGAAAGAGAAGGCAGAAGAGCACGCCGGAGAAGAGCACGAGAGCTTAATCCAGTATTACCTAGGCATATGGATGGAATGTCAAGTGATGACGAAGTTACTGAACAACAAAATCTTGTTTTCCGACAGTTCAAAGAAGAAACCGAAAAAGAATCTCGAGAACTGTTTGCCGATGTCGAAGATGATTTTTGTACAATTAGAGGAATTTTATCGAAACTAGAAGATTGGAGGACAACCGATTTAGAATCCTATAATGATGCGTACGTTCCTCTTTGCATTCCAAAAATAACTTCGCCTATCATACGTCTTCAACTTATTACATGGAATCCCATTATGGAAAGTGCTGAGCTAGAAAGATCAAAATGGTATAACGTCTTAGTTTTATATGGTTTGAATGTGAAAGAATCAGAAGAATCATTACGCTCTGATCCCGACGTTCGATTGATTCCGTCAACAATTGAAAAAATTGTTATTCCAAAATTGACAACTATTGTAGAAAAAATATGGGACCCGATGTCAACATCACAAACTTTGCGGCTAGTCGGACTAATTAATCGTTTAGTTAGAGATTATCCTAATTTAAATGAAACTAGTAAGCAGCTAGAAGCCCTTTTTAATGTAATATTTGAGAAAATTAAAGCCGCTGTAGAGAATGATGTTTTTATTCCAATATTTCCCAAACAAGTCATGGAAACAAAACACCAATTTTTTCAACGTCAGTTTGCAATGGCAATTAAGCTACTTCGAAATTTACTGAGTTGGCAGGGTCTACTGGGAGATCTTCAATTAAAAAATATTGCCTTGGGATCGTTATTAAATAGATATCTACTTGCTGGATTGCGAGTTTCACCTCCAGTCGATGCTCTTACCAAAGCTAATATGATTATGAGTACACTACCACGAGCATGGCTGCAAGGAGAAAAAATAGAACATTTAAAAATGTTTTCACTTCTAGTTCGACAATTGAGTGAACAACTTGATCAAGCTAATCCCGCTCACAACGAAGCATGGGAATACTCAAAGTCTATCTTGAAGATTATCAAACCTCTGTAA
Protein Sequence
MSLFNKPKRNIRRRHFNDEEEDNENRSMETEDMQILRNKVKKKDKPKQTLLSFGDDLDEADEGEVFKVKKSSRSRRLMKQLDQERKKKKGEEKMQVDSDSTIMSNMQEKDLEIKTDDLVVKIKNTGPMILNGRDALTAGKNDYSSEDEVDSNQGHKFQNKSDRSENMKFFLQSGCIPDAAMIHAARKRRQKARELGHDYIPVEEQGDDKGTCRLVREEDHDRSDDEDSQERINMTVDTEALDKEKRRQAFLDSQTPVARVSDEESEPEEEEWEVQQIRKGVTGAQIAAAHQDSIVQYNTLGIGPSHMIDSGISMMTSTMIPAAPPPPMIQPPDPTKCVPITAEEVLNKMRERLNNLREVHRRHELNYDAVIHELLQSKKELEDGENRAPEMAQRYKYYQELRGYVTDLVECLNEKLPKVAALESRWVELYGDRSMELMERRRQDTRDQAEEVTSASRGPVLRRGPEDEARMRRATEREGRRARRRRARELNPVLPRHMDGMSSDDEVTEQQNLVFRQFKEETEKESRELFADVEDDFCTIRGILSKLEDWRTTDLESYNDAYVPLCIPKITSPIIRLQLITWNPIMESAELERSKWYNVLVLYGLNVKESEESLRSDPDVRLIPSTIEKIVIPKLTTIVEKIWDPMSTSQTLRLVGLINRLVRDYPNLNETSKQLEALFNVIFEKIKAAVENDVFIPIFPKQVMETKHQFFQRQFAMAIKLLRNLLSWQGLLGDLQLKNIALGSLLNRYLLAGLRVSPPVDALTKANMIMSTLPRAWLQGEKIEHLKMFSLLVRQLSEQLDQANPAHNEAWEYSKSILKIIKPL