Abak013072.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- bab1
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000025.1:357388-359374[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-18 6.7e-15 54.3 0.0 1 43 42 85 42 87 0.95 2 2 0.46 7.8e+02 -0.3 0.5 6 15 166 175 161 176 0.85
Sequence Information
- Coding Sequence
- ATGCCAGGCCAAGCAGACAGCTATCAGTATCAACTTCAGTCAATGTGGCAAAAGTGTTGGAACACCAATCAGAGTCTTGTGCATAACCTTCGCTTTCGGGAACGTGGCCCCTTGAAATCTTGGCGTCCCGAAACGATGGCGGAAGCGATATTCAGCGTGCTCAAAGAGGGTCTGTCGCTGAGCCAAGCTGCAAGGAAATACGATATTCCCTACCCGACGTTTGTACTTTACGCGAACCGAGTTCACAATATGCTCGGGCCGAGCGCCGACGGTGGAGCTGGTAAGTATCTGCGGCCAAAGGGACGAGGGAGGCCACAGAGGATCTTACTCGGCGTTTGGCCGGACGAGCACATCCGCGGCGTGATTCGCGCAGTGGTCTTCCGCGATGGGCACTCGCCCCACATTGTCAAAGAGGAACCAGCCACAATGTACCCCGCCTTAGCGAATTACGGCGCCTGCAACGGACCCGAGGGAGCCGTGAGCCCCAGTGCGGCTGCAGCCGCGGTCGCCGCCGTCGCTCAAGGTCTGAGACATCAAATTCCCGGATCGGTCGGACCGCCCGAGAGCCCGATGGAGTCACCGCTGGCCAGTCCTCTGGGTTCCCTCATGGATCCGTCGCACCTGCCGTCGAGCGTCGAGGTTGGCATTGGCGTAAGCGGCATGACCTACAAGCCTGCGCGCAGCTTCGTCAGTCCAAGGCCCGAGAACCTCTTTCAAGAGGACATTTCCGATCTGGTAAAGAGCTCCCACGCCGCCCTCAAGGAGAAGGACAAAATCGCCGTCAAACTCGAGCCGCTAACGGATTCGCGCTGTGAATAG
- Protein Sequence
- MPGQADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGKYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPATMYPALANYGACNGPEGAVSPSAAAAAVAAVAQGLRHQIPGSVGPPESPMESPLASPLGSLMDPSHLPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDISDLVKSSHAALKEKDKIAVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00463917;
- 90% Identity
- iTF_00845204;
- 80% Identity
- -