Ahis017591.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- -
- Assembly
- GCA_947579745.1
- Location
- OX388144.1:5279996-5289781[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.1e-06 0.005 16.7 0.0 7 35 46 73 42 78 0.88 2 3 0.79 1.3e+03 -0.6 0.0 17 30 181 194 180 195 0.89 3 3 0.0013 2.1 8.3 0.0 5 34 203 231 199 242 0.81
Sequence Information
- Coding Sequence
- ATGGACCACGGGATCCCTCTGAACATCCACGCTCGGCCACGCATCGTCGGCAGGCGGCCCAACGCCATTGTCAACATAGAAACAGATGTCTTTCAAGAAAAATCCTACAAGCAATACTCGTCCCAGCACCTCAGAGATGCTCTCATCGCAGTAAAAAAAGGCTACAGTGTATACGCAGCGTCAAACAAATATGGCGTCCCCAGGAAAACTTTAAGGAATTGGATGGAGAAATACGATATCAAGAGTCAGTTTTCGAAAGAGTATCCAATAGCAAATGTACAATGCCAGTACGACAGCCCGAGTGACACGGAGGGGGATGAGCGGGTTGCGGGCGTGGGAGGCGACCACACTTACGGAAGAGTCGATTCCACAGACGAACCACCCGCCTTCCTTATACAGCAGACCAGCAAAATGCGAGCAGACACCCAAATGGCGAATCTCATTCCCATCGCGCCGAAGATCATGACGATAGCACCCGGATACCCATCTGTCAATCTCATACAGGTCGCAGAGCATGGGGACCAAGCGCCTATCACGCCTATCAGTACAAACCAAACCCAACCGGAGTACAATATAAACAAGCGTATCCGGCGCAGCGAGGGAGTTTTACGAGCCGCGGCAGACTGCGTGTCGCGCGGACTCACCTTCCAAACTGTCTCCGAGCAGTTCAACATACCCATCTCTACTATACGGTTCTTCATGGCGCGAAAGGGAATCTTACCGAGGCGACGACGAGGGCGAAGTACTCAGGTGGTCCGTACGTCATCCAGCCCCGAGCCACCATTCCACATGCAACACTACAAGTTGCCGCACATGCTCGCGCTCAAAGCGGACGAAGACGAACGACACGAGTGA
- Protein Sequence
- MDHGIPLNIHARPRIVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKEYPIANVQCQYDSPSDTEGDERVAGVGGDHTYGRVDSTDEPPAFLIQQTSKMRADTQMANLIPIAPKIMTIAPGYPSVNLIQVAEHGDQAPITPISTNQTQPEYNINKRIRRSEGVLRAAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRSTQVVRTSSSPEPPFHMQHYKLPHMLALKADEDERHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00044425; iTF_01209183;
- 90% Identity
- -
- 80% Identity
- -