Ppul050708.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982977.1:5521502-5534354[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-05 0.011 17.1 0.0 7 35 46 73 42 78 0.88 2 2 0.022 14 7.1 0.0 6 33 206 232 203 233 0.82
Sequence Information
- Coding Sequence
- ATGGACCACGGTATACCACTGAATATTCACGCAAGACCTCGCATAGTTGGACGGCGACCAAACGCAATCGTCAACATAGAAACCGACGTGTTCCAAGAGAAATCCTACAAGCAGTACTCATCTCAGCATTTAAGAGATGCCCTGATTGCAGTGAAGAAAGGCTACAGCGTTTACGCAGCTTCAAACAAATATGGCGTGCCCAGGAAGACTTTGAGGAATTGGATGGAGAAATACGATATAAAAAGTCAGTTTTCGAAAGAATATCCAATAGCGAACGTGCAATGCCAATACGACAGCCCAAGTGACACGGAAGTAGAAGAGAGGACTGAGGTTGTACCTACGGAGGACCACACGTACGGAGTAAGGACTCATACGGAAAGCACCATTGTGAATGATGAGCCACCCGCCTTTGTGATACATCAGACTAGCCAGATAAAAACGCTGCAGTTCGCGAACCTGGCTCCGAAGATCATGACCATAGCACCAGGGTATCCTTCCGTCAACCTCATACATGTTGCTGAACAGGCGCCAAACAATGTTCCTAGCAGTACAAATCAGAACCAGCCTGCAGAGTACAACATGAACAAGCGCATCCGCCGCAGCGAGGTAGTATTGCGCGCGGCGGCTGACTGCGTATCACGAGGACTTACGTTCCAGACTGTGTCTGAGCAGTTTAACATACCTATATCTACTATAAGGTGA
- Protein Sequence
- MDHGIPLNIHARPRIVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKEYPIANVQCQYDSPSDTEVEERTEVVPTEDHTYGVRTHTESTIVNDEPPAFVIHQTSQIKTLQFANLAPKIMTIAPGYPSVNLIHVAEQAPNNVPSSTNQNQPAEYNMNKRIRRSEVVLRAAADCVSRGLTFQTVSEQFNIPISTIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00143014;
- 90% Identity
- -
- 80% Identity
- -