Arep025125.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421251.1:1226903-1234889[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-05 0.0069 16.7 0.0 7 35 46 73 42 78 0.88 2 3 6.9 2.7e+03 -1.2 0.0 17 30 178 191 177 192 0.89 3 3 0.0037 1.4 9.3 0.0 5 34 200 228 196 239 0.86
Sequence Information
- Coding Sequence
- ATGGACCATGGGATACCGTTGAACATTCATGCTCGGCCGCGGATCGTCGGCAGACGCCCCAACGCCATAGTCAACATAGAAACCGACGTCTTCCAAGAAAAATCATACAAGCAGTACTCTTCGCAACACCTCAGGGACGCCTTAATCGCTGTCAAAAAAGGTTACAGTGTCTACGCGGCGTCAAACAAATATGGCGTCCCTAGGAAAACTTTGAGGAATTGGATGGAGAAATACGATATAAAGAAGTACCCGATAGCCAATGTTCAGTGTCAGTACGACAGTCCAAGCGACACGGACGCCGAGGAGCGAGCTGTGGACGGCGGCGGAGACCACACGTACGGACGCCTCGAGTCTACCGACGAGCCACCTGCTTTCGTCATACAGCAGACGAAGATGTTGCCGACAGAGGGCAACGCACACATCGCAAACCTCGTCCCTATCGCGCCGAAAATCATGACGATAGCACCGGGGTACCCATCGCTCAACCTCATACAGGTCGTCAAACAAACGGACCAGGCGAACGTCATGCCTACCAGTACAAACCAATCCCAACCAGAGTTCAACATAAGCAAGCGCATCCGGCGCAGTGAAGGGGTGttgcgcgccgccgccgagtGCGTGTCTCGCGGCCTCACCTTCCAGACTGTGTCGGAACAGTTCAACATACCCATCTCGACCATACGGTTTTTCATGGCGCGGAAAGGAATCTTGCCGAGGCGGCGAAGAGGACGAAGTACTCTGatgCCATCCCGTACTTCAGCCAGTCCCGAGCCACCATTCCACATGCAACACTACAAGTTGCCGAACATGGTCGCCCTCACAGCGGAGGACGACGAGCAACCGGAGACGGGCTAG
- Protein Sequence
- MDHGIPLNIHARPRIVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKKYPIANVQCQYDSPSDTDAEERAVDGGGDHTYGRLESTDEPPAFVIQQTKMLPTEGNAHIANLVPIAPKIMTIAPGYPSLNLIQVVKQTDQANVMPTSTNQSQPEFNISKRIRRSEGVLRAAAECVSRGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRSTLMPSRTSASPEPPFHMQHYKLPNMVALTAEDDEQPETG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00143014;
- 90% Identity
- -
- 80% Identity
- -