Asti007506.1
Basic Information
- Insect
- Aphodius sticticus
- Gene Symbol
- -
- Assembly
- GCA_963966075.1
- Location
- OZ014506.1:80979236-80980313[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.44 4.4e+03 -0.6 0.1 58 67 9 18 4 21 0.70 2 3 1.5 1.5e+04 -2.3 0.3 6 6 59 59 39 69 0.66 3 3 5e-17 5e-13 50.4 1.0 5 70 89 154 85 154 0.96
Sequence Information
- Coding Sequence
- ATGGCATCAGCATCAGCAGTAGGAAAATGCCAAATATGTGGAGAACAATTATCGTATACACCCGACGAAGTTACTGCCTTTGGTAGACATCTCTTGGAGAAACACCAAGAAGAACCTCTCACTCATTTCTCGTTTACTGATAATGTTGTATCAGGCGGTGGTTGTGATTGCACTTGCAGTTGCCATCATCATCAACAGAAGAAAGAAAAACGAGATAAAAGGGCTTACAAAACCACAGTTGAAAGTTGGAAACAAGGTGCTGTTGAACAGGAGTGTCCAAATTGTGGAAAAGTTGGCCTTCCACTAATAAGAAAACAACGCAATAAGGTATCCAGAAATTCCTTTGGTACGCTATGCTTGGTAGGTTGTTGGCCACTATGCTTTCTGCCATTCCTACTAGGAGGAAGCGATGTCATGTATCTATTCTGCCAGGACTGTGGGTACTTCTTAGGAACATATAATAGAAAAGACGGCCGCATTTGCACATCGTGTCCAATCGACTCAAACGAGTATGGAGCAAAAATTTGCAAGTGCGATATGCTCAATAATTAG
- Protein Sequence
- MASASAVGKCQICGEQLSYTPDEVTAFGRHLLEKHQEEPLTHFSFTDNVVSGGGCDCTCSCHHHQQKKEKRDKRAYKTTVESWKQGAVEQECPNCGKVGLPLIRKQRNKVSRNSFGTLCLVGCWPLCFLPFLLGGSDVMYLFCQDCGYFLGTYNRKDGRICTSCPIDSNEYGAKICKCDMLNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00137575; iTF_00981969; iTF_01098877; iTF_01098163;
- 90% Identity
- iTF_00981969;
- 80% Identity
- -