Agra005271.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- -
- Assembly
- GCA_963971325.1
- Location
- OZ020221.1:36383574-36384506[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.86 2.8e+03 -0.6 0.1 58 67 9 18 4 21 0.70 2 4 2.5 8.1e+03 -2.1 0.3 38 38 58 58 39 75 0.64 3 4 9.8e-17 3.2e-13 50.5 1.0 5 70 88 153 84 153 0.96 4 4 1.7 5.6e+03 -1.6 0.3 57 62 158 163 156 165 0.84
Sequence Information
- Coding Sequence
- ATGGCATCCGCATCGGCCGTAGGAAAATGTCAAATATGTGGGGAACAATTATCATACACACCCGACGAGGTTACTGCCTTTGGCAGACATCTCTTGGAAAAGCATCAAGAAGAACCACTTACCCATTTCTCGTTTACTGACGGTATTCACCAAGGGGGGGCTTGTGATTGCACTTGTAGCTGTCATGGACACCATAAGAAGAAAACAAAGGATAAAAAGGCTTACAAAACTACAGTGGAAAGTTGGAAACAAGGTGCTGTGGAACAGGAGTGTCCAAATTGCGGCAAGGTTGGCCTTCCGCTCATACGAAAGCAACGCAATAAGGTGTCCAGAAATTCCTTTGGCACGCTGTGCTTGGTAGGTTGCTGGCCCTTGTGTTTTCTGCCCTTCCTACTTGGAGGGAGCGATGTTATGTACCTATTCTGTCAGGACTGTGGATACTTCTTAGGAACCTATAATAGAAAGGACGGTCATATTTGTACATCGTGTCCAATTGACTCGAACGAGTACGGGGCAAAAATTTGCAAATGCGAAATGTCCGATTGA
- Protein Sequence
- MASASAVGKCQICGEQLSYTPDEVTAFGRHLLEKHQEEPLTHFSFTDGIHQGGACDCTCSCHGHHKKKTKDKKAYKTTVESWKQGAVEQECPNCGKVGLPLIRKQRNKVSRNSFGTLCLVGCWPLCFLPFLLGGSDVMYLFCQDCGYFLGTYNRKDGHICTSCPIDSNEYGAKICKCEMSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00138915;
- 90% Identity
- iTF_00981969;
- 80% Identity
- -