Basic Information

Insect: Aphodius sticticus
Gene Symbol: -
Assembly: GCA_963966075.1
Location: OZ014514.1:18294469-18304155[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.25 2.5e+03 0.1 0.2 22 44 185 207 178 212 0.72

2 13 0.006 60 5.3 0.6 21 44 212 235 204 245 0.83

3 13 0.92 9.2e+03 -1.7 0.0 21 44 240 263 236 267 0.76

4 13 0.00016 1.6 10.3 0.1 21 44 268 291 259 298 0.89

5 13 0.045 4.5e+02 2.5 0.1 26 45 301 320 295 326 0.87

6 13 0.37 3.7e+03 -0.4 0.0 26 48 328 349 322 355 0.82

7 13 0.013 1.3e+02 4.2 0.0 21 46 379 403 375 407 0.84

8 13 0.0014 14 7.3 0.1 21 45 407 431 404 435 0.87

9 13 0.0023 23 6.6 0.0 21 45 435 459 431 467 0.89

10 13 0.76 7.6e+03 -1.4 0.1 26 44 468 486 460 494 0.83

11 13 0.0018 18 7.0 0.4 21 44 519 542 511 550 0.81

12 13 0.046 4.6e+02 2.5 0.2 20 44 546 570 542 576 0.78

13 13 0.0041 41 5.8 0.1 21 44 575 598 571 603 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.25	2.5e+03	0.1	0.2	22	44	185	207	178	212	0.72
2	13	0.006	60	5.3	0.6	21	44	212	235	204	245	0.83
3	13	0.92	9.2e+03	-1.7	0.0	21	44	240	263	236	267	0.76
4	13	0.00016	1.6	10.3	0.1	21	44	268	291	259	298	0.89
5	13	0.045	4.5e+02	2.5	0.1	26	45	301	320	295	326	0.87
6	13	0.37	3.7e+03	-0.4	0.0	26	48	328	349	322	355	0.82
7	13	0.013	1.3e+02	4.2	0.0	21	46	379	403	375	407	0.84
8	13	0.0014	14	7.3	0.1	21	45	407	431	404	435	0.87
9	13	0.0023	23	6.6	0.0	21	45	435	459	431	467	0.89
10	13	0.76	7.6e+03	-1.4	0.1	26	44	468	486	460	494	0.83
11	13	0.0018	18	7.0	0.4	21	44	519	542	511	550	0.81
12	13	0.046	4.6e+02	2.5	0.2	20	44	546	570	542	576	0.78
13	13	0.0041	41	5.8	0.1	21	44	575	598	571	603	0.85

Sequence Information

Coding Sequence: ATGGAAGAGTTGAGTGCGAACGCTGGTAATGTTTCGATAACCATTCGTCGATGTGATAATGACAACGAGACCATTTCGAGCCAGAAATCACCTGACTGTCCTGCTAGCACCTGTAAGATAACCAATCTTTGTTTTTCTACCAACCAACagaatattgaaattaaaactGAAACTGAACTGGACATTGGGGAAATTAAAGTTAAGTCTGAAGTTTCATTTGATTTCATTGATGAATGCTACGAGTACGGTGGCAAGATAACAAATACCGATGATTTTGATTcttataacaaaaacattgaAATAAAGTACATACCGGGTACGAATATTGAAGAAAATGAAGTTAAATCTGAAGTTGCCATGGATACTGACAATGGGTTGGAGTTCATAGCGGTTAAAGCTGAACCGGAAATAGACACAGATGATGGCTCAGTTAAATCTACCAACAGTGAACTTAATGGTAAGTTGAATCGAAGaatacaaACCAACATCAATGATGGGAATATAAATAAAGCAACTGCTTTTGTATGCAAGTGCACAAATTCTACTCTGCAAGAAAACACCTATAAGTGCACTATCTGTGATTACGCTGCCAGCCGAGCATATATCCTTAGAAAGCATATGCGCAAACATTCAATCGAGAAGCCGTACAAGTGCACGACGTGTGACTACGCTTCTAGAGTTTCATGCGATCTTAAACGGCATATTCTACAACataaaaacgaaaaatcgcatgtATGTTCGATGTGTGACTATGCTTCTAACATTGCATACGACCTTAAGCGTCACATGGTAAAACATACTGGGGAGAAGCCGCATAAGTGCACTGTTTGTAAATACGCCACGTCACAATCAAGCAATCTCAAAAAGCATATGATAACACATACAGGAGACAAACGGCATATGTGCAGTCTGTGTGACTATACTTCTGCACAATCAAACCATCTTAAACGTCATATGTCACAACACACAGGGGAGAAGTATAACTGCAGTGAGTGCGACTATGTTGCAAACAAAACATCCAATCTCAAAAAACATACACTAAAACATACTGGAGGAAAACCTTTTAGGTGTGATCTGTGCGAATATGCTAGCACAAAAGCGTCTGATCTTAACGCACATATTCTAAAACACAACGGAGAGAAGCCGATTAAGTGCGATATGTGCGATTACGCAACCACGCAAGCGTCGTCTCTTAAAAAACATATGCTCAAACACACAGGCGAAAAACCGTATAAGTGCGTTATGTGCGATTATGCTGTTGCGCAATCGTACCTTCTTAAACGTCATATGCATCAACATACAGGGGAAAAGCCATATAAGTGCACGCTTTGCGATTACGCTGCCCGGCAATCAGGAAGTCTTAAACTCCATATGCAAAAACATACGGGGGAGATGCGTTATAACTGTTCGATGTGCGATTGTGGTTTTGCGCAAGCCAGCCATTATAAACGTCATATGCTAGTACATACGGGTGATAGGCCGTTTAAGTGCGCAACGTGTGACTATGCTTCCGTCGAAGCGTATCAGCTTAAAGTGCATAGCATGAAACATTCCGGCGAGAAGCCTTTTAAATGTAGTGTGTGCGATTATGCTACGATACGATCGCGTCATCTTACGTGTCATATGATGAAACATAGAGGGGAGAAACCGTATAAGTGCACTGTGTGTGATTATGCTGCCTGTGCATCGTCTCAGCTTAAACAACATATTCTAAAACATACCGGCGAGAAACCACATAAGTGCGCTGTTTGTGTTTATGCTACGACACAGATAAGCAAACTTAAACGTCATATGCTCACACATGCAGGGCATTCTTAG
Protein Sequence: MEELSANAGNVSITIRRCDNDNETISSQKSPDCPASTCKITNLCFSTNQQNIEIKTETELDIGEIKVKSEVSFDFIDECYEYGGKITNTDDFDSYNKNIEIKYIPGTNIEENEVKSEVAMDTDNGLEFIAVKAEPEIDTDDGSVKSTNSELNGKLNRRIQTNINDGNINKATAFVCKCTNSTLQENTYKCTICDYAASRAYILRKHMRKHSIEKPYKCTTCDYASRVSCDLKRHILQHKNEKSHVCSMCDYASNIAYDLKRHMVKHTGEKPHKCTVCKYATSQSSNLKKHMITHTGDKRHMCSLCDYTSAQSNHLKRHMSQHTGEKYNCSECDYVANKTSNLKKHTLKHTGGKPFRCDLCEYASTKASDLNAHILKHNGEKPIKCDMCDYATTQASSLKKHMLKHTGEKPYKCVMCDYAVAQSYLLKRHMHQHTGEKPYKCTLCDYAARQSGSLKLHMQKHTGEMRYNCSMCDCGFAQASHYKRHMLVHTGDRPFKCATCDYASVEAYQLKVHSMKHSGEKPFKCSVCDYATIRSRHLTCHMMKHRGEKPYKCTVCDYAACASSQLKQHILKHTGEKPHKCAVCVYATTQISKLKRHMLTHAGHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00138338;
90% Identity: iTF_00138338;
80% Identity: iTF_00138338;