Basic Information

Insect: Aphodius sticticus
Gene Symbol: -
Assembly: GCA_963966075.1
Location: OZ014514.1:18294469-18304155[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00012 0.0093 17.8 0.7 1 23 188 210 188 210 0.99

2 15 0.0016 0.12 14.2 2.5 1 23 216 238 216 238 0.98

3 15 0.0031 0.24 13.3 0.6 1 23 244 266 244 266 0.97

4 15 5.6e-06 0.00043 22.0 3.4 1 23 272 294 272 294 0.98

5 15 0.0014 0.1 14.5 4.5 1 23 300 322 300 322 0.96

6 15 0.00061 0.047 15.6 1.3 1 23 327 349 327 349 0.98

7 15 0.0003 0.023 16.5 0.2 1 23 355 377 355 377 0.98

8 15 9.5e-06 0.00073 21.3 0.6 2 23 384 405 383 405 0.97

9 15 0.0002 0.016 17.1 1.4 1 23 411 433 411 433 0.98

10 15 7.4e-05 0.0057 18.4 0.6 1 23 439 461 439 461 0.99

11 15 4.3e-05 0.0033 19.2 3.3 1 23 467 489 467 489 0.98

12 15 0.016 1.2 11.1 0.3 1 23 495 517 495 517 0.98

13 15 0.017 1.3 11.0 5.2 1 23 523 545 523 545 0.98

14 15 0.00071 0.054 15.4 1.2 1 23 551 573 551 573 0.99

15 15 0.0011 0.085 14.8 1.5 1 23 579 601 579 601 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00012	0.0093	17.8	0.7	1	23	188	210	188	210	0.99
2	15	0.0016	0.12	14.2	2.5	1	23	216	238	216	238	0.98
3	15	0.0031	0.24	13.3	0.6	1	23	244	266	244	266	0.97
4	15	5.6e-06	0.00043	22.0	3.4	1	23	272	294	272	294	0.98
5	15	0.0014	0.1	14.5	4.5	1	23	300	322	300	322	0.96
6	15	0.00061	0.047	15.6	1.3	1	23	327	349	327	349	0.98
7	15	0.0003	0.023	16.5	0.2	1	23	355	377	355	377	0.98
8	15	9.5e-06	0.00073	21.3	0.6	2	23	384	405	383	405	0.97
9	15	0.0002	0.016	17.1	1.4	1	23	411	433	411	433	0.98
10	15	7.4e-05	0.0057	18.4	0.6	1	23	439	461	439	461	0.99
11	15	4.3e-05	0.0033	19.2	3.3	1	23	467	489	467	489	0.98
12	15	0.016	1.2	11.1	0.3	1	23	495	517	495	517	0.98
13	15	0.017	1.3	11.0	5.2	1	23	523	545	523	545	0.98
14	15	0.00071	0.054	15.4	1.2	1	23	551	573	551	573	0.99
15	15	0.0011	0.085	14.8	1.5	1	23	579	601	579	601	0.98

Sequence Information

Coding Sequence: ATGGAAGAGTTGAGTGCGAACGCTGGTAATGTTTCGATAACCATTCGTCGATGTGATAATGACAACGAGACCATTTCGAGCCAGAAATCACCTGACTGTCCTGCTAGCACCTGTAAGATAACCAATCTTTGTTTTTCTACCAACCAACagaatattgaaattaaaactGAAACTGAACTGGACATTGGGGAAATTAAAGTTAAGTCTGAAGTTTCATTTGATTTCATTGATGAATGCTACGAGTACGGTGGCAAGATAACAAATACCGATGATTTTGATTcttataacaaaaacattgaAATAAAGTACATACCGGGTACGAATATTGAAGAAAATGAAGTTAAATCTGAAGTTGCCATGGATACTGACAATGGGTTGGAGTTCATAGCGGTTAAAGCTGAACCGGAAATAGACACAGATGATGGCTCAGTTAAATCTACCAACAGTGAACTTAATGGTAAGTTGAATCGAAGaatacaaACCAACATCAATGATGGGAATATAAATAAAGCAACTGCTTTTGTATGCAAGTGCACAAATTCTACTCTGCAAGAAAACACCTATAAGTGCACTATCTGTGATTACGCTGCCAGCCGAGCATATATCCTTAGAAAGCATATGCGCAAACATTCAATCGAGAAGCCGTACAAGTGCACGACGTGTGACTACGCTTCTAGAGTTTCATGCGATCTTAAACGGCATATTCTACAACataaaaacgaaaaatcgcatgtATGTTCGATGTGTGACTATGCTTCTAACATTGCATACGACCTTAAGCGTCACATGGTAAAACATACTGGGGAGAAGCCGCATAAGTGCACTGTTTGTAAATACGCCACGTCACAATCAAGCAATCTCAAAAAGCATATGATAACACATACAGGAGACAAACGGCATATGTGCAGTCTGTGTGACTATACTTCTGCACAATCAAACCATCTTAAACGTCATATGTCACAACACACAGGGGAGAAGTATAACTGCAGTGAGTGCGACTATGTTGCAAACAAAACATCCAATCTCAAAAAACATACACTAAAACATACTGGAGGAAAACCTTTTAGGTGTGATCTGTGCGAATATGCTAGCACAAAAGCGTCTGATCTTAACGCACATATTCTAAAACACAACGGAGAGAAGCCGATTAAGTGCGATATGTGCGATTACGCAACCACGCAAGCGTCGTCTCTTAAAAAACATATGCTCAAACACACAGGCGAAAAACCGTATAAGTGCGTTATGTGCGATTATGCTGTTGCGCAATCGTACCTTCTTAAACGTCATATGCATCAACATACAGGGGAAAAGCCATATAAGTGCACGCTTTGCGATTACGCTGCCCGGCAATCAGGAAGTCTTAAACTCCATATGCAAAAACATACGGGGGAGATGCGTTATAACTGTTCGATGTGCGATTGTGGTTTTGCGCAAGCCAGCCATTATAAACGTCATATGCTAGTACATACGGGTGATAGGCCGTTTAAGTGCGCAACGTGTGACTATGCTTCCGTCGAAGCGTATCAGCTTAAAGTGCATAGCATGAAACATTCCGGCGAGAAGCCTTTTAAATGTAGTGTGTGCGATTATGCTACGATACGATCGCGTCATCTTACGTGTCATATGATGAAACATAGAGGGGAGAAACCGTATAAGTGCACTGTGTGTGATTATGCTGCCTGTGCATCGTCTCAGCTTAAACAACATATTCTAAAACATACCGGCGAGAAACCACATAAGTGCGCTGTTTGTGTTTATGCTACGACACAGATAAGCAAACTTAAACGTCATATGCTCACACATGCAGGGCATTCTTAG
Protein Sequence: MEELSANAGNVSITIRRCDNDNETISSQKSPDCPASTCKITNLCFSTNQQNIEIKTETELDIGEIKVKSEVSFDFIDECYEYGGKITNTDDFDSYNKNIEIKYIPGTNIEENEVKSEVAMDTDNGLEFIAVKAEPEIDTDDGSVKSTNSELNGKLNRRIQTNINDGNINKATAFVCKCTNSTLQENTYKCTICDYAASRAYILRKHMRKHSIEKPYKCTTCDYASRVSCDLKRHILQHKNEKSHVCSMCDYASNIAYDLKRHMVKHTGEKPHKCTVCKYATSQSSNLKKHMITHTGDKRHMCSLCDYTSAQSNHLKRHMSQHTGEKYNCSECDYVANKTSNLKKHTLKHTGGKPFRCDLCEYASTKASDLNAHILKHNGEKPIKCDMCDYATTQASSLKKHMLKHTGEKPYKCVMCDYAVAQSYLLKRHMHQHTGEKPYKCTLCDYAARQSGSLKLHMQKHTGEMRYNCSMCDCGFAQASHYKRHMLVHTGDRPFKCATCDYASVEAYQLKVHSMKHSGEKPFKCSVCDYATIRSRHLTCHMMKHRGEKPYKCTVCDYAACASSQLKQHILKHTGEKPHKCAVCVYATTQISKLKRHMLTHAGHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00138908;
90% Identity: iTF_00138908;
80% Identity: iTF_00138908;