Agra023472.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- tfip11
- Assembly
- GCA_963971325.1
- Location
- OZ020226.1:24386071-24391034[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-95 4.6e-91 306.1 7.2 1 275 401 672 401 672 0.97 2 2 0.19 3.1e+03 -1.7 0.0 156 189 683 715 677 724 0.60
Sequence Information
- Coding Sequence
- ATGTCAGAAGACGAAGTGGAAAAGTTCGAGATCACAGATTACGATTTAGAGAACGAATTCAACATAAACAGACCACGCAGAAGGCAAACCAAACATCAACAAACATACGGGATATGGGCAGACGACAGTGACGAAGAACCCGACACCAGACCGTCATTTAAGTCCCACAAACCCCCAAAAAACTACTCCGCACCCATCGGCTTTGTCGCCGGTGGCGTCCAACAATCTGGCAAGAAAAAGGACGCAGAACTCAAGAAAAACGATGAAATATCCGACGAAGAAGAGGCCGGGACTTCGTACCAAATAAAAAACAGTTCCAGCGATTCGGAAGATGAGGCTTTGCCCCGTAGAGGCTTCGGAGCAGCCCGGGCCCCACCAGGGGGCCCTGTTCAATCCACCGTAACGGAGATTACGGGGGATATCGCCGGTTTACGGAATAAACGGGGTAAAGTCTCGACGACTTTGATGAATAAGGGGGTCGGAAATTGGGAGAAGCATACTAAGGGAATCGGGGCTAAACTCTTGCTGCAGATGGGGTTCCAGCCGGGGAAGGGCCTCGGCAAGGATTTGCAGGGTATTTCCGCGCCCGTCGAAGCTCACTTGAGGAAAGGTCGCGGGGCTATCGGGGCTTATGGGCCGGAAAAGAAGACTAGCGTCCCTATTTTAAAGagCATTGATAAGGAAGAGGATGATGGAACAGAATTGGAAACAAAATGGAAGAAACCCGATATCGGAAGCGGCAAGAAAACCAGATACTACTATAAAAGCGTTGACGATGTAATTGAAAAAGGTAAACGTCCTGGAGCTAATAGAAATTTTGGACCGGCAAGTGAACTTTCGAAAGTTAAAGTCATCGATATGACCGGCCCCCAGCAGAGGGTTCTAAGCGGGTACCACGCCTTGAGCGGCTTGAAAGCGCCACCTGGTGTCGAGAGAtacgaagatgtcgttcacaaGAAATGCACAAACTTCGCCTTACCAGAGATGCAGCACAATCTCGATTTATTAGTAGACATGTGCGAAcagGACATCATCAGCATTGACAGGAGTTCACGATACAACCAAGACATCTTGCAGCACTTAAAACACGACGAAGTAAATctaaaatcgacaattttaaaGGAAGAGAAAGTTTTGGATACTTTGAGTTCTTTACTACAGATTGTCAATAAGCTGATGGATTCATCTTTGGGGCTGTCGTTGGGACAAGTTGCTGGGATTTTTACCCAACTACAGgAGGAATACTTAGAGGAATATTGCCAATATGGCTTGGGGGAGTTAGCCCCTGGTTTGGTAGGACCACTTCTAACATCCGGTTTAGCAAGTTGGCAACCGTTATCGTACCCAAAACAATACGTGGATCTTTTCGGCCAATGGAAGGACATCTTGGAGAAGCCGTTACAGCGAGGGACCATTGAAGGTAATTGTATGGGAATTCAGCCATTTGATTCACTCTTATGGCATACTTGGGTTCCGGTAATCAGATCTTGCGTTAGCACTTGGAAAGCTAGGGATTGCGACCCGATGATTTACCTCCTGGAAGCGTGGAAACCACTTCTAGCGCCGTGGCTCCTGGATAACATCCTGGATCAGGATATCATCCCAAAATTATTGAAGGAAGTTCAAGGATGGGATCCGTTGACTGATACGATCCCAATACACACTTGGGTGCACCCGTGGATTCCATTATTAGATAGCAAACTGCAAGTTAGTATTTATCCAATTATCCAGGAAAAATTGGGTATTTGTCTCACAAACTGGCATCCGTCTGATAGATCTGCCAAACCTATGTTGAAACCGTGGCAACGTGTTTTACCAGAGGGCGCTTTCGTCGCTTTTCTACTAAAACATATCGTGCCTAAATTGCAACACTGTATGCAGAATCTTGTTATAAATCCACATCAGCAACCACTCGAACCTTGGCACTGGGTGATGGACTGGAGCGACATGTTGTCCGTCGGGAACATGACTCTAATTCTGGACAAATACTTCTTCCCCCGTTGGCTGCAAACACTCAGTATGTGGCTCAACCACAATCCTAACTTCACACAAGTCACCGAATGGTTCATAGGGTGGAAACGGCAATTATCCGAGCAGTTATTAGCGCAACCAACCATCAATGATAACTTCCAAAAAGCTTTAGAAATAATGAATCGAGCAGCCTCTAGCGGACACCAACCGGGAGCGAAGGAATCCGTATCCTACTTGACGAACATCGAGAATAATTTCCCGTCTGTTCAGGTGCCGGCCCCGGGGCCCCAGAGGATAGATTCTTTTGCTGAAGCTGTAAGAACTGCAAGTCAAATCCCGGAGGGGATTAGAGATTTAGTGGGGAAACGCTGTGAAGAGAGGGGGATATTATTTGTCCCGATCCCCAATAAATATTACGAGGCTAAGCAGGTTTATAGGTTAGGATCGCGGGGGGCGCAGTGCTATATCGATCGCAATGTTTTGTTCTACTCGCAGAATAATTCGCCGTGGTTGCCGACATCGTTGAGTAGATTGCTTGATTTAGCgtaa
- Protein Sequence
- MSEDEVEKFEITDYDLENEFNINRPRRRQTKHQQTYGIWADDSDEEPDTRPSFKSHKPPKNYSAPIGFVAGGVQQSGKKKDAELKKNDEISDEEEAGTSYQIKNSSSDSEDEALPRRGFGAARAPPGGPVQSTVTEITGDIAGLRNKRGKVSTTLMNKGVGNWEKHTKGIGAKLLLQMGFQPGKGLGKDLQGISAPVEAHLRKGRGAIGAYGPEKKTSVPILKSIDKEEDDGTELETKWKKPDIGSGKKTRYYYKSVDDVIEKGKRPGANRNFGPASELSKVKVIDMTGPQQRVLSGYHALSGLKAPPGVERYEDVVHKKCTNFALPEMQHNLDLLVDMCEQDIISIDRSSRYNQDILQHLKHDEVNLKSTILKEEKVLDTLSSLLQIVNKLMDSSLGLSLGQVAGIFTQLQEEYLEEYCQYGLGELAPGLVGPLLTSGLASWQPLSYPKQYVDLFGQWKDILEKPLQRGTIEGNCMGIQPFDSLLWHTWVPVIRSCVSTWKARDCDPMIYLLEAWKPLLAPWLLDNILDQDIIPKLLKEVQGWDPLTDTIPIHTWVHPWIPLLDSKLQVSIYPIIQEKLGICLTNWHPSDRSAKPMLKPWQRVLPEGAFVAFLLKHIVPKLQHCMQNLVINPHQQPLEPWHWVMDWSDMLSVGNMTLILDKYFFPRWLQTLSMWLNHNPNFTQVTEWFIGWKRQLSEQLLAQPTINDNFQKALEIMNRAASSGHQPGAKESVSYLTNIENNFPSVQVPAPGPQRIDSFAEAVRTASQIPEGIRDLVGKRCEERGILFVPIPNKYYEAKQVYRLGSRGAQCYIDRNVLFYSQNNSPWLPTSLSRLLDLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01097457;
- 90% Identity
- iTF_00137939;
- 80% Identity
- -