Basic Information

Insect: Aphis gossypii
Gene Symbol: -
Assembly: GCA_004010815.1
Location: NW:159247-163256[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 7.7e-08 5.8e-06 26.0 2.0 2 23 112 133 111 133 0.98

2 13 5.1e-06 0.00039 20.2 3.2 1 23 139 162 139 162 0.97

3 13 0.00069 0.052 13.5 0.4 5 23 174 192 172 192 0.93

4 13 1.1e-06 8.1e-05 22.4 3.5 1 23 198 220 198 220 0.98

5 13 1.4e-05 0.001 18.9 5.8 1 23 226 248 226 248 0.98

6 13 3.4e-07 2.6e-05 23.9 1.3 1 23 254 276 254 276 0.99

7 13 1.8e-05 0.0014 18.5 0.6 1 23 282 305 282 305 0.95

8 13 3.6e-05 0.0027 17.6 1.3 1 23 310 332 310 332 0.99

9 13 6.4e-06 0.00048 19.9 1.2 1 23 338 360 338 360 0.99

10 13 1.6e-08 1.2e-06 28.1 0.6 1 23 366 388 366 388 0.99

11 13 3.8e-05 0.0029 17.5 3.8 1 23 394 416 394 417 0.95

12 13 8.9e-06 0.00067 19.5 1.2 1 23 423 445 423 445 0.99

13 13 9.2e-07 6.9e-05 22.6 3.2 1 23 451 473 451 474 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	7.7e-08	5.8e-06	26.0	2.0	2	23	112	133	111	133	0.98
2	13	5.1e-06	0.00039	20.2	3.2	1	23	139	162	139	162	0.97
3	13	0.00069	0.052	13.5	0.4	5	23	174	192	172	192	0.93
4	13	1.1e-06	8.1e-05	22.4	3.5	1	23	198	220	198	220	0.98
5	13	1.4e-05	0.001	18.9	5.8	1	23	226	248	226	248	0.98
6	13	3.4e-07	2.6e-05	23.9	1.3	1	23	254	276	254	276	0.99
7	13	1.8e-05	0.0014	18.5	0.6	1	23	282	305	282	305	0.95
8	13	3.6e-05	0.0027	17.6	1.3	1	23	310	332	310	332	0.99
9	13	6.4e-06	0.00048	19.9	1.2	1	23	338	360	338	360	0.99
10	13	1.6e-08	1.2e-06	28.1	0.6	1	23	366	388	366	388	0.99
11	13	3.8e-05	0.0029	17.5	3.8	1	23	394	416	394	417	0.95
12	13	8.9e-06	0.00067	19.5	1.2	1	23	423	445	423	445	0.99
13	13	9.2e-07	6.9e-05	22.6	3.2	1	23	451	473	451	474	0.96

Sequence Information

Coding Sequence: atggaaTCAAGAACAACATCAATTGATTCCACAATAAATTCCAAatatgattatatattaaacagtcCTAGACAATTAATAATTCCACTAACTAGATGTGATCATCTGCTCAATCGACCATCTGATATAGTACTTAAACAGGAATATATTCCGACTGCTAaagattataatgattatcaaCCATTACAAATCGGGACTGGATGTGAAACCACCATAGAAAAAGTGAACATTAATGGGactgaaattaaaatcgaaaaaGATTATATCGACGGTTGTGTATTTGAAAGTATAGTTTCTCAAAGTCATTCAGATGAAAGCTCTAATAAATCTAAGAAATgtgaaatttgtaataaaatgtttactagaagcagatatttgaaaattcacATGAGGATTCATACTGGAGAAAAACCTTTTAAATGTGATTTATGCGatgtatcatttaaattaaatcaccaTTTGAAAagacatattatgataattcatAAGAGTAAAAGAGAAAAGCCATTCGTTAGTGGCATTTGTAATAAGTCTTATGATAATAGttcattattgaaaaaacataaattgtttCATACAGATAAAAGTCCTCACAAATGTGATGTATGTAACAAAGCATTTTTTAGCTCTTCAAATTTGAAGAAGCATAAAATGATACATACAGGAGAAAAACCGTTTGAATGTAAATTATGTGATAAAGTATTTTCTCATGCACATTGTTTAGAAATTCATACAAACACACATACGGGTAAAAAACCTTACAAATGTgatgtttgtaataaaatgttaactagAAAAGAATATTTGAAAGTTCATATGAGGCTCCATACTGGAGAATCCCCTTTTATTTGTGCTAACTGCAATCAATCATTTCGTAGTAAGGCACTATTGaaaagtcatattattaattaccatcTAGGAGAAAAATACAAGtgtaaaatttgtttgaaaaattttgcTAGTAGTTCAAGGATCAAAATTCATATGCAAAGTCATATCGGTGAAGAGAAATATAAATGTGATGTATGTAACAAAGCATTTTTTGATTCTTTAAGTttgaataatcataaaatgacACATACAGAAGAAAAACGTTTTAAGTGTGATGTTTGTAATAAGATGTTTACTAGAAACGGATATTTAATAGTTCATATGAGGATCCATACTGGAGAATCTCCTTTTATGTGTGATATCTGTAATCAATCATTTCATCGTAAACCACTTTTGaaaagtcatattattaaacaccaTACAGGAGAAAAATCTTACAAGtgtaaaatttgtttgaataaattttccACTAGTTCAAGTATCAATGTTCATATGAGAATTCATAATGGAGAATTCCCTTTTACTTGTGATatctgtaataaattatttcgtcAAAAAGATCTattgaaaaaacatattattaaacaccaTATAGGAGAAAAATCTTAG
Protein Sequence: MESRTTSIDSTINSKYDYILNSPRQLIIPLTRCDHLLNRPSDIVLKQEYIPTAKDYNDYQPLQIGTGCETTIEKVNINGTEIKIEKDYIDGCVFESIVSQSHSDESSNKSKKCEICNKMFTRSRYLKIHMRIHTGEKPFKCDLCDVSFKLNHHLKRHIMIIHKSKREKPFVSGICNKSYDNSSLLKKHKLFHTDKSPHKCDVCNKAFFSSSNLKKHKMIHTGEKPFECKLCDKVFSHAHCLEIHTNTHTGKKPYKCDVCNKMLTRKEYLKVHMRLHTGESPFICANCNQSFRSKALLKSHIINYHLGEKYKCKICLKNFASSSRIKIHMQSHIGEEKYKCDVCNKAFFDSLSLNNHKMTHTEEKRFKCDVCNKMFTRNGYLIVHMRIHTGESPFMCDICNQSFHRKPLLKSHIIKHHTGEKSYKCKICLNKFSTSSSINVHMRIHNGEFPFTCDICNKLFRQKDLLKKHIIKHHIGEKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00135821; iTF_00135590; iTF_00135822; iTF_00135589;
90% Identity: iTF_00135821; iTF_00135590; iTF_00135822; iTF_00135589;
80% Identity: -