Agly010620.1
Basic Information
- Insect
- Aphis glycines
- Gene Symbol
- -
- Assembly
- GCA_009928515.1
- Location
- scaffold:1221464-1223901[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.3e-05 0.17 12.2 0.1 17 48 103 134 98 138 0.81 2 11 0.0021 8.1 6.8 0.1 21 51 135 165 130 171 0.92 3 11 0.039 1.5e+02 2.7 0.0 23 45 196 218 191 225 0.84 4 11 0.23 9.1e+02 0.2 0.0 21 45 222 246 218 254 0.82 5 11 1.1 4.3e+03 -2.0 0.0 22 44 251 273 245 277 0.79 6 11 0.03 1.1e+02 3.1 0.1 21 47 278 304 267 308 0.84 7 11 1.8 7.1e+03 -2.7 0.0 26 42 312 328 304 332 0.66 8 11 1.9 7.4e+03 -2.7 0.0 22 44 364 386 361 390 0.74 9 11 0.043 1.7e+02 2.6 0.1 21 47 391 417 380 423 0.84 10 11 1.7 6.6e+03 -2.5 0.0 22 44 421 443 416 447 0.72 11 11 2.2e-05 0.085 13.1 0.1 21 48 448 475 444 479 0.88
Sequence Information
- Coding Sequence
- ATGGAATCAAGAACAACATTAATTGATTCCACAATAAATTCCAAATATGATTATATATTAAACAGTCCTAGACAATTAATAATTCCACTGACTAGATGTGATCATCTGCTCAATCGACCATCTGATATAGTACTTAAACAGGAATATATTCCAACTGCTAAAGATTATAATGATAATCAATCATCACAAATCGGGACTGGATGTGAAACCACCATAGAAAAAGTGAACATTAATGGGACTGAAATTAAAATCGAAAGAGATTATGTCGACGGTTGTGTGTTTGAAAGTATAGTTTCTCAAAGTCATTCAGATGAAAGCTCTAATAAATCTAAGAAATGTGGAATTTGTTATAAAATGTTTACTAGAAGCAGATATTTGAAAATTCACATGAGGATTCATACTGGAGAAAAACCTTTTAAATGTGATTTATGCGATGTATCATTTAAATTAAAGCACCATTTGAAAAGACATATCATGATAATTCATATGAGTAAAAGAGAAAAGCCATTCGTTAGTGGCATTTGTAATAAGTCTTATGATAATAGTTCATTTTTGAAAAAACATAAATTGTTTCATACAGATAAAAGGCCACACAAATGTGATGTATGTAACAAAGCATTTTTTAGTTCTTCAAATTTGAATAAACATAAAATGATACATACAGGAGAAAAACCTTTTGAATGTAAATTATGTGATAAAGTATTTTCTCATGCACATAGTTTAGAAATTCATACAAACACACATACGGGTAAAAAACCTTTCAAATGTGATGTTTGTAAAAACATGTTTACTAGAAAAGGATATTTAAAAGTTCATATGAGGATCCATACTGGAGAATCCCCTTTTATTTGTGCTATCTGCAATCAATCATTTCGCAGTAAGGCACTATTGAAAAGTCATATTATTAAACACCATACAGGAGAAAAATTTTACAAGTGTAAAATTTGTTTGAAAAAATTTGCTAGAAGTTCAAGGGTCAAAATTCATATGCAAAGTCATATTGGCGAAGAGAAATATAAATGTGATGTATGTAACAAAGCATTTTTTGATTCTTCAAGTTTGAATAATCATAAAATGATACATACAGAAGAAAAACCTTTTAAGTGTGATGCTTGTAATAAGACGTTTACTAGAAACGGATATTTAAAAGTTCATATGAGGATCCATACTGGAGAATCTCCTTTTATGTGTGATATCTGTAATCAATCATTTCGTCGTAAACCACTTTTGAAAAGTCATGTTATTAAACACCATACAGGAGAAAAATCTTACAAGTGTAAAATTTGTTTGAAGAAATTTACCAGTAGTTCAAGCATCAATGTTCATATGAGAATTCATAATGGAGAATTCCCTTTTACTTGTGATATCTGTAATAAATTATTTCGTCAAAAAATACTATTGAAAAGACATATTATTAAACACCATATAGGAGAAAAATCTTAG
- Protein Sequence
- MESRTTLIDSTINSKYDYILNSPRQLIIPLTRCDHLLNRPSDIVLKQEYIPTAKDYNDNQSSQIGTGCETTIEKVNINGTEIKIERDYVDGCVFESIVSQSHSDESSNKSKKCGICYKMFTRSRYLKIHMRIHTGEKPFKCDLCDVSFKLKHHLKRHIMIIHMSKREKPFVSGICNKSYDNSSFLKKHKLFHTDKRPHKCDVCNKAFFSSSNLNKHKMIHTGEKPFECKLCDKVFSHAHSLEIHTNTHTGKKPFKCDVCKNMFTRKGYLKVHMRIHTGESPFICAICNQSFRSKALLKSHIIKHHTGEKFYKCKICLKKFARSSRVKIHMQSHIGEEKYKCDVCNKAFFDSSSLNNHKMIHTEEKPFKCDACNKTFTRNGYLKVHMRIHTGESPFMCDICNQSFRRKPLLKSHVIKHHTGEKSYKCKICLKKFTSSSSINVHMRIHNGEFPFTCDICNKLFRQKILLKRHIIKHHIGEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00136308;
- 90% Identity
- iTF_00136308;
- 80% Identity
- iTF_00135589;