Agly010564.1
Basic Information
- Insect
- Aphis glycines
- Gene Symbol
- ZNF219
- Assembly
- GCA_009928515.1
- Location
- scaffold:1234499-1237811[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.9e-05 0.11 12.7 0.1 19 48 107 136 100 140 0.85 2 10 0.0022 8.6 6.7 0.1 21 51 137 167 133 173 0.92 3 10 0.032 1.2e+02 3.0 0.0 22 46 197 221 187 228 0.85 4 10 0.25 9.8e+02 0.1 0.0 21 45 224 248 222 256 0.81 5 10 0.9 3.5e+03 -1.7 0.0 22 44 253 275 233 280 0.81 6 10 0.03 1.2e+02 3.1 0.2 21 47 280 306 272 312 0.84 7 10 1.9 7.5e+03 -2.7 0.0 22 44 366 388 363 392 0.74 8 10 0.043 1.7e+02 2.6 0.1 21 47 393 419 382 425 0.84 9 10 1.7 6.6e+03 -2.6 0.0 22 44 423 445 418 449 0.72 10 10 2.2e-05 0.085 13.1 0.1 21 48 450 477 446 481 0.88
Sequence Information
- Coding Sequence
- ATGGAATCAAGAACAACATTAATTGATTCCACAATAAATTCCAAATATGATTATATATTAAACAGTCCTAGACAATTAATAATTCCACTGACTAGATGTGATCATCTGCTCAATCGACCATCTGATATAGTACTTAAACAGGAATATATTCCAACTGCTAAAGATTATAATGATAATCAATCATCACAAATCGGGACTGGATGTGAAACCACCATAGAAAAAGTGAACATTAATGGGACTGAAATTAAAATCGAAAGAGATTATGTCGACGGTTGTGTGTTTGAAAGTATAGTTTCTCAAAGTCATTCAGATGAAAGCTCTAGCTCTAATAAATCTAAGAAATGTGGAATTTGTTATAAAATGTTTACTAGAAGCAGATATTTGAAAATTCACATGAGGATTCATACTGGAGAAAAACCTTTTAAATGTGATTTATGCGATGTATCATTTAAATTAAAGCACCATTTGAAAAGACATATCATGATAATTCATATGAGTAAAAGAGAAAAGCCATTCGTTAGTGGCATTTGTAATAAGTCTTATGATAATAGTTCATTTTTGAAAAAACATAAATTGTTTCATACAGATAAAAGGCCACACAAATGTGATGTATGTAACAAAGCATTTTTTAGTTCTTCAAATTTGAATAAACATAAAATGATACATACAGGAGAAAAACCTTTTGAATGTAAATTATGTGATAAAGTATTTTCTCATGCACATAGTTTAGAAATTCATACAAACACACATACGGGTAAAAAACCTTTCAAATGTGATGTTTGTAAAAACATGTTTACTAGAAAAGGATATTTAAAAGTTCATATGAGGATCCATACTGGAGAATCCCCTTTTATTTGTGCTATCTGCAATCAATCATTTCGCAGTAAGGCACTATTGAAAAGTCATATTATTAAACACCATACAGGAGAAAAATTTTACAAGTGTAAAATTTGTTTGAAAAAATTTGCTAGAAGTTCAAGGGTCAAAATTCATATGCAAAGTCATATTGGCGAAGAGAAATATAAATGTGATGTATGTAACAAAGCATTTTTTGATTCTTCAAGTTTGAATAATCATAAAATGATACATACAGAAGAAAAACCTTTTAAGTGTGATGCTTGTAATAAGACGTTTACTAGAAACGGATATTTAAAAGTTCATATGAGGATCCATACTGGAGAATCTCCTTTTATGTGTGATATCTGTAATCAATCATTTCGTCGTAAACCACTTTTGAAAAGTCATGTTATTAAACACCATACAGGAGAAAAATCTTACAAGTGTAAAATTTGTTTGAAGAAATTTACCAGTAGTTCAAGCATCAATGTTCATATGAGAATTCATAATGGAGAATTCCCTTTTACTTGTGATATCTGTAATAAATTATTTCGTCAAAAAATACTATTGAAAAGACATATTATTAAACACCATATAGGAGAAAAATCTTAG
- Protein Sequence
- MESRTTLIDSTINSKYDYILNSPRQLIIPLTRCDHLLNRPSDIVLKQEYIPTAKDYNDNQSSQIGTGCETTIEKVNINGTEIKIERDYVDGCVFESIVSQSHSDESSSSNKSKKCGICYKMFTRSRYLKIHMRIHTGEKPFKCDLCDVSFKLKHHLKRHIMIIHMSKREKPFVSGICNKSYDNSSFLKKHKLFHTDKRPHKCDVCNKAFFSSSNLNKHKMIHTGEKPFECKLCDKVFSHAHSLEIHTNTHTGKKPFKCDVCKNMFTRKGYLKVHMRIHTGESPFICAICNQSFRSKALLKSHIIKHHTGEKFYKCKICLKKFARSSRVKIHMQSHIGEEKYKCDVCNKAFFDSSSLNNHKMIHTEEKPFKCDACNKTFTRNGYLKVHMRIHTGESPFMCDICNQSFRRKPLLKSHVIKHHTGEKSYKCKICLKKFTSSSSINVHMRIHNGEFPFTCDICNKLFRQKILLKRHIIKHHIGEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00136308;
- 90% Identity
- iTF_00136308;
- 80% Identity
- iTF_00135590;