Agly013415.1
Basic Information
- Insect
- Aphis glycines
- Gene Symbol
- stc
- Assembly
- GCA_009928515.1
- Location
- scaffold:4896446-4900494[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.3e-08 0.0016 18.5 10.9 1 18 17 34 17 35 0.94 2 10 0.064 1.2e+03 -0.3 0.4 5 10 66 71 66 72 0.90 3 10 3.6e-05 0.71 10.1 13.3 4 18 84 98 77 99 0.86 4 10 0.56 1.1e+04 -3.3 2.5 5 10 125 130 125 130 0.94 5 10 0.00081 16 5.8 7.6 1 11 136 146 136 147 0.95 6 10 0.22 4.3e+03 -2.0 2.0 4 10 151 157 150 157 0.91 7 10 2.7e-08 0.00053 20.1 6.4 1 18 163 180 163 181 0.91 8 10 0.51 9.9e+03 -3.2 10.5 1 18 220 237 220 238 0.88 9 10 0.0038 74 3.6 18.1 1 19 274 294 268 298 0.85 10 10 2.3e-06 0.044 13.9 13.3 3 17 305 321 304 323 0.85
Sequence Information
- Coding Sequence
- ATGGTGATGTATTACAGCTGTGGAAGTCTGTGTGAAAAAAAATTGTCTTGTGAAAATCACTTATGCCAGAAACTGTGTCATGTTGGTCAATGTGAGCCATGTATAGCATTATCTGTTAATACATGTCCTTGTGGAAAACGGCCATTAACTGAAGATGAACTGAGCTCCCGTACATTATGCACACAACCCGTACCCACATGTGACCAACCATGTGGAAAACCTCTAGAATGTGGTCCCCCAGAAAATCCTCATCTATGTGAACAAAAGTGTCATGAAGGCCCGTGTGTTCGTTGTGAACTAAAAACCAAATATGTATGTAAATGTGGTAGTAGATCCAAGGAAATAAAATGTAATTCTGTGACCAGTGAATTGACTTGCAAAAAAAAATGTAACAAGATGATGTCTTGCGGTAAACATAGATGTATGACAGTATGTTGTAATGCACAAGAACATATATGTACCAGAACTTGTAACGGACTATTAAATTGCCGTATACATCGTTGTGATCGTGTATGCCATACTGGTAGCTGTGCAATGTGCTATGAAGCAAGTTTTGAAGAGTTGTATTGTCGATGTGGCAATAGTTTCATTACTCCTCCTATCAGTTGTGGTACTCGTCCGCCATTATGTACATTACCTTGTTCAAGAGAACACGAATGTGGTCATCCAGCTACTCATATATGTCATGACGAGGAAGAATGCCCTCCTTGTATAGCTTTGACTGAAAAATTGTGTTTTGGTGGTCATGAGCTGCGATTTGCTATACCATGTCATATAAAAAACGTATCGTGTGGAATGCCATGCGGAATTCCACTTCCTTGCAATAGACATACTTGTGCCAAACCATGTCATGCACCACCATGTAATACAGGTCCTTGTCGGTTACCATGCAATTTACCAAAGTTGGATTGTAATCATCCATGTTCTAAACCTTGTCATAGTGGTCCGTGTCCGTCAATAGCGTGCAAAATAATGGTGAGTGTTAGTTGTATTTGTGGAAATTTGACAGAAGTTAGGATATGTTCTGATCCCAAATTGGTTGAATATCGCCTTCAAGTTAAAGCACAATCAATGAGCTTACTAGACAATATTGTTGACTCATCGCCAACTATAAAATCATATAAAATTTTGGAGTGTACAACAGAATGTGCTAAATTAGAAAGAAATCGTCGTATTGCCCTAGCACTTCAAATTCGAAATCCAGATTTATCCCCCAACGTCACCCCACGGTATTCAGATTTCATGAAAGAATTTGCGAAAAGAGATGCACCGTTTTGTAATTATGTCCATGAAAAACTTGCTGAATTAGTAACTAGTGCTAAACAATCTAAACAAAATTCTCGAAGTCATTCATTTGAAGTAATGAGGTATGAAAAACGAAAATTGATTCACGAATACAGTGAACATTTTGGATGTGAATCAGTAGCTTATGATGCCGAACCAAATAGAAATGTTGTTGCTACAGCTCTTAAAGAAAAATCATGGCTTCCTAATTATAGTGTAGTAGAAGTTGTACAACGTGAAAGCGGATGCCCACGAGTCAATCCATTTGCAAGCATTCAAAAACGAAACACCGTTATTTTAAACAAAAAATTCTAA
- Protein Sequence
- MVMYYSCGSLCEKKLSCENHLCQKLCHVGQCEPCIALSVNTCPCGKRPLTEDELSSRTLCTQPVPTCDQPCGKPLECGPPENPHLCEQKCHEGPCVRCELKTKYVCKCGSRSKEIKCNSVTSELTCKKKCNKMMSCGKHRCMTVCCNAQEHICTRTCNGLLNCRIHRCDRVCHTGSCAMCYEASFEELYCRCGNSFITPPISCGTRPPLCTLPCSREHECGHPATHICHDEEECPPCIALTEKLCFGGHELRFAIPCHIKNVSCGMPCGIPLPCNRHTCAKPCHAPPCNTGPCRLPCNLPKLDCNHPCSKPCHSGPCPSIACKIMVSVSCICGNLTEVRICSDPKLVEYRLQVKAQSMSLLDNIVDSSPTIKSYKILECTTECAKLERNRRIALALQIRNPDLSPNVTPRYSDFMKEFAKRDAPFCNYVHEKLAELVTSAKQSKQNSRSHSFEVMRYEKRKLIHEYSEHFGCESVAYDAEPNRNVVATALKEKSWLPNYSVVEVVQRESGCPRVNPFASIQKRNTVILNKKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305225; iTF_00812392;
- 90% Identity
- iTF_01305225;
- 80% Identity
- -