Hcor004523.1
Basic Information
- Insect
- Hormaphis cornu
- Gene Symbol
- stc
- Assembly
- GCA_017140985.1
- Location
- CM029357.1:17341548-17346581[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.2e-10 2.4e-06 27.6 17.0 1 19 38 56 38 56 0.98 2 10 0.52 1e+04 -3.2 0.8 6 10 88 92 87 95 0.49 3 10 0.00029 5.8 7.2 12.8 4 18 105 119 98 120 0.86 4 10 0.58 1.2e+04 -3.4 2.5 5 10 146 151 146 151 0.94 5 10 0.0022 45 4.4 7.6 1 11 157 167 157 168 0.94 6 10 0.023 4.7e+02 1.1 1.7 4 10 172 178 171 178 0.93 7 10 1.2e-06 0.024 14.8 9.2 1 18 184 201 184 202 0.91 8 10 1 2e+04 -9.2 13.6 10 18 249 258 235 259 0.74 9 10 0.034 6.7e+02 0.6 19.1 1 19 295 315 285 319 0.83 10 10 1.5e-07 0.003 17.7 12.4 1 18 325 343 325 344 0.90
Sequence Information
- Coding Sequence
- ATGTCTGCAGTGTGTTATTGTGGTCAGTCACAACGAATGGTTCCATGCTCTCCGGAAAATTCCATGGTAGTATATTACAGTTGCGGAAAATCATGTGGTAAACAATTGGCTTGTGGAAATCACACATGTCAGACACCATGTCATGATGGTCCATGCAAACCTTGTAGTGCTTTAACTGTCCATAGCTGCCCTTGTGGAAAACGAATATTAACACAAGATGAAATAGACAACCGAACATCGTGCTTACAACCCGTTCAAACATGCGGTCAGCGTTGTGAAAAACCCCTAGAATGTGGTCCCCCTGAAAATCCTCACGTTTGTGGAAAAATCTGTCACGAAGGTCCATGCGTTCGTTGTGAACTTAAAACCAAATATGTGTGCAAATGCGGAAATAGATCTAAAGAAATAAAGTGCAGTTCTGTAACTAATGAATTGACGTGCAAAAAAAAGTGTAACAAGATGATGTCTTGTGGAAAACATAGATGCACAGTAATGTGTTGTAATGCACAAGAACATGAATGTAACAGGATTTGTAATGGATTATTAAATTGTCGTCAACATCGTTGCACCCGCGCTTGTCATACAGGCAGATGTAATATGTGTTATGAAGCAAGCTATGATGAATTGTTCTGTCGGTGTGGAAACAGTTTCGTTTTGCCTCCAATCAGATGTGGCACTCCTCGTCCACTCTGTACGTTACCTTGTTCAAGAGAGCACGAATGTGATCATGTACCTACTCATAATTGTCATGACAATGAAGAATGTCCTCCTTGTTTAACTCTCACTGAAAAATTATGTTATGGTGCTCATGAGCTGCGTTTTGCCATACCGTGTAATGTTAAAAATGTGTCATGTGGTATGCCATGTGGCAATCCATTATCCTGCAAACGACACTCATGCATTAAACCATGTCATCCACCGCCTTGCAATGATGGACCGTGCAGCTTACCTTGCAACTTGCCAAAAATGGATTGTGGACATGCATGTGCAAAACCTTGTCACGATGGGCCATGTCCTCGAATTGCCTGCAAAACAATGGTAAGTGTAAGTTGTATTTGTGGAAATTTGACGGAAGCCAGGATGTGTTCAGACCCTAAGGTAATTGAATACAGGTTACAGATCAAAGCACAATCTGTGAGTCTTTTAGACAATATTGTTGATTCATCGCCAACCATAAAATCATACAAAATCCTAGAATGTACTTCAGAATGTTCTAAAATAGAGAGAAATCGTCGCTTAGCCCTCGCCCTCCAAATCCGTAATCCTGATTTATCTCCCAATGTCACTCCGCGATATTCTGACTTCATGAAAGACTTTGCAAAAAAAGATGTTCCATTTTGTAATTATGTCCATGAGAAACTTGCTGAATTAGTAACTAATGCCAAACAATCAAAACAAAATTCGCGAAGTCATTCATTTGAAGTGATGAAGTATGAAAAACGAAAATTTGTTCACGAGTACTGTGAACATTTTGGATGTGATTCGGTAGCTTACGATGCTGAACCAAATAGAAATGTGGTGGCTACTGCCTTCAAAAACAAATCGTGGCTTCCAAATTACAGTGTAGTGGAAGTGGTACAGCGAGAAAGTGGGTGCCCACGAGTCAACCCATTTGCGAGTATTCAAAAACGCAACACTATAATTCTGAACAAAAAATTGTAG
- Protein Sequence
- MSAVCYCGQSQRMVPCSPENSMVVYYSCGKSCGKQLACGNHTCQTPCHDGPCKPCSALTVHSCPCGKRILTQDEIDNRTSCLQPVQTCGQRCEKPLECGPPENPHVCGKICHEGPCVRCELKTKYVCKCGNRSKEIKCSSVTNELTCKKKCNKMMSCGKHRCTVMCCNAQEHECNRICNGLLNCRQHRCTRACHTGRCNMCYEASYDELFCRCGNSFVLPPIRCGTPRPLCTLPCSREHECDHVPTHNCHDNEECPPCLTLTEKLCYGAHELRFAIPCNVKNVSCGMPCGNPLSCKRHSCIKPCHPPPCNDGPCSLPCNLPKMDCGHACAKPCHDGPCPRIACKTMVSVSCICGNLTEARMCSDPKVIEYRLQIKAQSVSLLDNIVDSSPTIKSYKILECTSECSKIERNRRLALALQIRNPDLSPNVTPRYSDFMKDFAKKDVPFCNYVHEKLAELVTNAKQSKQNSRSHSFEVMKYEKRKFVHEYCEHFGCDSVAYDAEPNRNVVATAFKNKSWLPNYSVVEVVQRESGCPRVNPFASIQKRNTIILNKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00135854;
- 90% Identity
- -
- 80% Identity
- -