Rnym015067.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- stc
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000018.1:933242-938244[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9.4e-08 0.0024 18.3 9.7 1 18 60 77 60 78 0.95 2 10 0.069 1.8e+03 -0.4 0.4 5 10 109 114 109 115 0.90 3 10 4e-05 1 9.9 13.3 4 18 127 141 120 142 0.86 4 10 0.61 1.5e+04 -3.4 2.5 5 10 168 173 168 173 0.94 5 10 0.0018 45 4.7 7.5 1 11 179 189 179 190 0.95 6 10 0.21 5.4e+03 -2.0 2.2 4 10 194 200 193 200 0.91 7 10 2.3e-08 0.00058 20.3 7.2 1 18 206 223 206 224 0.91 8 10 0.56 1.4e+04 -3.3 10.5 1 18 263 280 263 281 0.88 9 10 0.018 4.6e+02 1.5 19.8 1 19 317 337 307 341 0.81 10 10 6.4e-06 0.16 12.5 14.2 1 17 347 364 347 366 0.84
Sequence Information
- Coding Sequence
- ATGCCTACTTGTTTATTACAAATTCTTCTCTGCTTGAAGTTTGCCTGCTCTACTAGCAAAGACACATTGATTCGTGTGTGTTACTGTGGAAAATCGGAGCGGCAAGTACCATGCACTCTAGAAAATGCCATGGTGATGTACTATAGCTGTGGAAATctgtgtgaaaaaaaattatcttgcGATAATCACTTATGCCAGAAAATGTGTCATGTTGGTCAATGTGACCCATGTATAGCTTTATCTGTTAATAGATGTCCTTGTGGAAAACGGCCATTGTCTGAAGATGAACTTTGCACCCGTACATTATGCACACAACCAATACCCACATGTGACCAACCATGTGGAAAACCTCTAGAATGTGGTCCCCCGGaaaatccACATTTATGTGAACAAAAATGTCATGAAGGCCCATGTGTTCGCTGTGAACTAAAAAccaaatatgtatgtaaatgTGGTAGTAGATCCAAGGAAATAAAATGCAATTCTGTAACCAGTGAATTAACTTGCAAAAAGAAATGTAACAagaTGATGTCTTGCGGTAAACATAGATGTATGACAATATGTTGTAATGCACAAGAACATGTATGTACCAGAACTTGTAATGGACTATTAAATTGCCGTATACATCGTTGTGATCGTATATGCCATACTGGAAGCTGTGCAACGTGCTATGAAGCAAGTTTTGAAGAGTTGTATTGTCGTTGTGGCAATAGTTTCATTTCTCCTCCTATCAGATGTGGTACTCGTCCACCATTATGTACATTACCTTGTTCAAGAGAACATGAATGTGGTCATCCAGCTACTCATATATGTCACGATGAGGAAGAATGTCCTCCTTGTATAGCTTTAActgaaaaattgtgttttgGTGGTCATGagCTGCGGTTTGCTATACCGtgtcatataaaaaatgtatcatgtgGAATGCCTTGTGGTATTCCACTTCCTTGTAAAAGACATACTTGTACCAAACCATGTCATGCACCACCATGTAATACCGGTCCATGTCGGTTACCATGCAATTTACCAAAACTAGATTGCAGTCATCCATGTTCTAAACCTTGTCACGATGGTCCTTGTCCATCAACAGCATGCAAAATAATGGTGAGTGTTAGCTGTATTTGTGGGAATTTGACAGAAACTAGAATATGTTCTGATCCCAAGGTGATTGAATATCGTCTTCAAGTTAAAGCACAATCAATGAGCTTCATAGATAATATTGTTGACTCATCGCCAATcataaaatcgtataaaattttggaGTGTACAACAGAATGTGCTAAATTAGAAAGAAATCGTCGTATTGCCCTTGCACTTCAAATCCGTAATCCAGATTTATCTCCTAATGTCACTCCTCGATATTCAGATTTCATGAAAGAATTTGCAAAAAAAGATGCACCATTCTGTAGTTATGTCCATGAAAAACTTGCTGAATTAGTCACTAATGCCAAACAAtcTAAACAAAATTCTCGAAGTCATTCATTTGAAGTAATGAAGTATGAAAAACGGAAATTGATTCACGAGTACAGTGAACATTTTGGATGTGAATCAGTAGCTTATGACGCTGAACCAAATAGAAATGTTGTAGCTACAGCTCTTAAAGAAAaaTCATGGCTTCCCAATTATAGTGTGGTAGAAGTTGTACAACGTGAAAGCGGATGTCCACGAGTCAACCCATTTGCAAGCATTCAAAAACGAAATACCATTATTCTTAACAAAAAATTCTaa
- Protein Sequence
- MPTCLLQILLCLKFACSTSKDTLIRVCYCGKSERQVPCTLENAMVMYYSCGNLCEKKLSCDNHLCQKMCHVGQCDPCIALSVNRCPCGKRPLSEDELCTRTLCTQPIPTCDQPCGKPLECGPPENPHLCEQKCHEGPCVRCELKTKYVCKCGSRSKEIKCNSVTSELTCKKKCNKMMSCGKHRCMTICCNAQEHVCTRTCNGLLNCRIHRCDRICHTGSCATCYEASFEELYCRCGNSFISPPIRCGTRPPLCTLPCSREHECGHPATHICHDEEECPPCIALTEKLCFGGHELRFAIPCHIKNVSCGMPCGIPLPCKRHTCTKPCHAPPCNTGPCRLPCNLPKLDCSHPCSKPCHDGPCPSTACKIMVSVSCICGNLTETRICSDPKVIEYRLQVKAQSMSFIDNIVDSSPIIKSYKILECTTECAKLERNRRIALALQIRNPDLSPNVTPRYSDFMKEFAKKDAPFCSYVHEKLAELVTNAKQSKQNSRSHSFEVMKYEKRKLIHEYSEHFGCESVAYDAEPNRNVVATALKEKSWLPNYSVVEVVQRESGCPRVNPFASIQKRNTIILNKKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00135854;
- 90% Identity
- iTF_00135854;
- 80% Identity
- -