Agly016105.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphis glycines
Gene Symbol
-
Assembly
GCA_009928515.1
Location
scaffold:1250562-1256386[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.026 2.2 9.0 2.3 2 21 122 141 121 142 0.94
2 21 0.00015 0.013 16.0 1.1 1 23 149 171 149 171 0.98
3 21 3.1e-06 0.00026 21.4 0.6 2 23 178 199 177 199 0.98
4 21 0.0017 0.15 12.7 1.4 1 23 205 227 205 227 0.98
5 21 8.7e-06 0.00074 20.0 4.4 1 23 233 255 233 255 0.98
6 21 8.8e-06 0.00075 19.9 2.4 1 19 263 281 263 285 0.95
7 21 3.4e-07 2.9e-05 24.4 4.5 1 23 291 313 291 313 0.99
8 21 1.4e-07 1.2e-05 25.6 0.7 1 23 319 341 319 341 0.98
9 21 2.6e-05 0.0022 18.5 3.5 1 23 347 369 347 369 0.98
10 21 1.1e-05 0.00097 19.6 5.3 1 23 375 397 375 397 0.99
11 21 0.0013 0.11 13.1 0.9 1 23 403 425 403 425 0.95
12 21 5.2e-08 4.5e-06 26.9 2.0 1 23 431 453 431 453 0.99
13 21 5.9e-06 0.0005 20.5 2.1 1 23 459 481 459 481 0.99
14 21 8.8e-05 0.0075 16.8 3.1 1 23 487 509 487 509 0.97
15 21 2.7e-05 0.0023 18.4 0.2 1 23 515 537 515 537 0.98
16 21 2.4e-05 0.002 18.6 1.0 1 23 543 566 543 566 0.97
17 21 0.0021 0.18 12.4 0.8 1 23 572 594 572 594 0.99
18 21 2.5e-06 0.00021 21.6 1.9 1 23 600 622 600 622 0.97
19 21 1.6e-07 1.4e-05 25.4 1.6 1 23 628 650 628 650 0.99
20 21 0.0003 0.026 15.1 0.8 1 23 656 678 656 678 0.97
21 21 5.7e-07 4.9e-05 23.7 0.3 1 23 684 706 684 706 0.98

Sequence Information

Coding Sequence
ATGACAAGTGAAAAACAAGAAGATAAATTTAATATGGAGTTAAGAACAACTTCAAATGATGCCAAAATCTCTTCCAAGTATGGTTATATATTAAACAATTCTAGACAGTTGATAATTCCACTTATTAGATGTGATCATTTACTCAATCGACCATCTAATGTAGTTATTAAACAAGAATTTATTGCCAAGACCGAATATCATAATGATAGTCAATTACAAATTGGGACTGCACGTGAAACTGGAGAAAAAGTAAACACAAATATTACTGATATAAAAATCGAAAATGATTATATCGATAATAATGTATTTGAAAGTATAGTTGTTAGGCAAGATCACTCTTCAAACTTTCTGGAAAATACCTTAACATGCGAATTGTGTTGTAAAAAATTTACTGATGAATTCAGTATGAGAAGACATATGAAAATATATAGGGGAAAACCCACTTTTACATGTGAAATATGTAAACAATCATTTCATCAAAAACCACAGATGATCGCTCATATTTTAAATCACACAGAAGATAAATCTAACAAATGTGGTGTTTGTAATAAAATGTTTACAAGAAATGGATATGTAAAAATTCATATGAGGATCCATACTGGAGAAAAGCCGTATGAATGTAATTTATGTAATCAAAAATATGCTCACAGAGGAGGTTATGACATTCATATGAAAAATCATACTGGATTGAAACCGCACAAATGTGATTTATGTAATGTATCATTTAGTTTAAAAGGCCATTTGAAAAGACATATGTTGACTCATACCAGTAAAAGAGAAAGGACATATGTTTGTGACATTTGTAATAAGTCTTACTATAATAGTTCACATTTGAAAAGACACAAATGGCTTCATTCTGCAGAAAAACCTTATAAATGCACTATCTGTAATAGAACATTTTCAGACACGAGCCATCTCAAAACACACACAAGAATTCATACTGGTGAAAAGCCTTTTAAATGTGAAATTTGCAATAAATCTTTTATTGTAAAATCAAGTTTGACAATACATATGATGAATCACACAGGATTGAAACCTTTCAAATGTAAAGACTGTTTTAAGACATTCAGTAATATGACACGACTGAAATCACATATGTCAGTTCATACAGGAGAAAAACCATTCAAATGTAGCATATGTCATAAATTATTTTCTAAATCAACCAATTTACAATACCATATGATGAAACATAAAGACGAAAATCCTCATAAGTGTATCGTGTGTAATAAAACATTCGCAATCGCATCATTTTTAAAAAGCCATATGATTATTCATTCTTCCAACAAGCCTTATAAATGTAATGTTTGTGATAAAGTATTTTCCCAGGCAATACATTTAAAAGTTCATACTAGAACACATACTGGGGAAAAACCTTATAAATGTGATGTTTGTTACAAATCATTTTCGGTATCTAATTCTTTAACTTTACACAAGAGAACTCATACTGGGGAAAAGCCATTTAAATGTGAAATATGTGATTATAGATGTACGACATCTTCTTCATTAATAATTCATAACAGATTTCATTCTGGGAAAAAACCTTATAGTTGTGATGTATGTAACAAGGCATTTGTTGCTGCTTCACTTTTAAATGTACATAAAAAGAAACATACAGGAGAAAAACCGTTTAAATGTGACTTATGTCCTAGAACATTTATTCAAAAATCTACTATAAGAATGCACATTATGAGTTTTCATTCTAAATTCAGACCTTATAAGTGTGATGTTTGTAAGAACTCATATGCTTCAAGATCAATTTTGAAATTGCATACGAGAATACATACTGGAGAATCTCCTTTTACTTGTGGTATCTGTAATAAATCATTTCGTCACAAACCACTATTGAAAAGTCATATTATAAACCATACAGGAGAAAAAGCTTATAAGTGTAAAATTTGTTCGAAAACGTTTACTAATAGCTCAGGTGTTAAAATGCACATGAGAATTCATACTGGTGAAAAACCATATAAGTGTGATTTATGTACGAGAGGATTCCGTTATAAAGGAAGTTTTGATATTCACATGGCCCAGCATACTGGGTTAAAACCCTATAAATGTGATATATGTAATAAAGCCTTTGCTGTGAAATCAAGATTGATTCGCCATATGAGTATTCATACTAATGTTTAA
Protein Sequence
MTSEKQEDKFNMELRTTSNDAKISSKYGYILNNSRQLIIPLIRCDHLLNRPSNVVIKQEFIAKTEYHNDSQLQIGTARETGEKVNTNITDIKIENDYIDNNVFESIVVRQDHSSNFLENTLTCELCCKKFTDEFSMRRHMKIYRGKPTFTCEICKQSFHQKPQMIAHILNHTEDKSNKCGVCNKMFTRNGYVKIHMRIHTGEKPYECNLCNQKYAHRGGYDIHMKNHTGLKPHKCDLCNVSFSLKGHLKRHMLTHTSKRERTYVCDICNKSYYNSSHLKRHKWLHSAEKPYKCTICNRTFSDTSHLKTHTRIHTGEKPFKCEICNKSFIVKSSLTIHMMNHTGLKPFKCKDCFKTFSNMTRLKSHMSVHTGEKPFKCSICHKLFSKSTNLQYHMMKHKDENPHKCIVCNKTFAIASFLKSHMIIHSSNKPYKCNVCDKVFSQAIHLKVHTRTHTGEKPYKCDVCYKSFSVSNSLTLHKRTHTGEKPFKCEICDYRCTTSSSLIIHNRFHSGKKPYSCDVCNKAFVAASLLNVHKKKHTGEKPFKCDLCPRTFIQKSTIRMHIMSFHSKFRPYKCDVCKNSYASRSILKLHTRIHTGESPFTCGICNKSFRHKPLLKSHIINHTGEKAYKCKICSKTFTNSSGVKMHMRIHTGEKPYKCDLCTRGFRYKGSFDIHMAQHTGLKPYKCDICNKAFAVKSRLIRHMSIHTNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00134721;
90% Identity
iTF_00134721; iTF_00136301;
80% Identity
-