Acrc013469.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphis craccivora
Gene Symbol
-
Assembly
GCA_009835225.1
Location
VUJU01007816.1:1957-5135[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.035 4 8.8 2.8 2 21 97 116 96 117 0.94
2 21 0.00027 0.03 15.5 1.2 1 23 124 146 124 146 0.98
3 21 1.3e-06 0.00014 22.8 1.0 2 23 153 174 152 174 0.98
4 21 0.0023 0.26 12.5 1.1 1 23 180 202 180 202 0.98
5 21 9.8e-06 0.0011 20.0 4.4 1 23 208 230 208 230 0.98
6 21 1.4e-05 0.0016 19.5 2.6 1 19 238 256 238 260 0.95
7 21 1.4e-07 1.6e-05 25.8 6.0 1 23 266 288 266 288 0.99
8 21 1.6e-07 1.8e-05 25.6 0.7 1 23 294 316 294 316 0.98
9 21 5.6e-05 0.0063 17.6 4.2 1 23 322 344 322 344 0.98
10 21 1.5e-05 0.0017 19.4 5.5 1 23 350 372 350 372 0.99
11 21 2.4e-05 0.0027 18.8 1.3 1 23 378 400 378 400 0.97
12 21 5.9e-08 6.6e-06 27.0 2.0 1 23 406 428 406 428 0.99
13 21 6.6e-06 0.00074 20.5 2.1 1 23 434 456 434 456 0.99
14 21 8.3e-05 0.0093 17.1 3.1 1 23 462 484 462 484 0.97
15 21 6.1e-05 0.0068 17.5 0.4 1 23 490 512 490 512 0.98
16 21 2.4e-05 0.0027 18.8 1.7 1 23 518 541 518 541 0.97
17 21 0.00041 0.046 14.9 0.7 1 23 547 569 547 569 0.99
18 21 1.2e-05 0.0014 19.7 1.6 1 23 575 597 575 597 0.97
19 21 1.4e-06 0.00015 22.7 3.2 1 23 603 625 603 625 0.99
20 21 0.0027 0.31 12.3 0.7 1 23 631 653 631 653 0.97
21 21 3e-07 3.3e-05 24.8 0.3 1 23 659 681 659 681 0.99

Sequence Information

Coding Sequence
tatgattatatattaaacagttcGAGACAGTTGATAATTCCACTTAATAGATGTGATAATTTACTCAATTGTCCatctaatatagttattaaacaaGAATTTATTGCCAAGACCGACTATCATAATGATAgtcaattattacaaattgggaCTGCACGTGAAACTGGAGAAAAAGTTAACACAAATGATactgatataaaaattgaaaatgattatatcgataataatgtatttgaaagTATAGTTGTTAAGGAAGATCACTCTTCAAACTTACTGGAAAATACCTTAACATGCAAATTgtgttgtaaaaaatttactgATGAATTCAGTATGAGAAGACATATGCAAATATATAGGAGAAAACCCACTTTTACATGTGATATATGTAAACAATCATTTCATCAAAAACCACGGTTGATCgctcatattttaaatcacacAGAAGATAAATCTAACAAATGtagtatatgtaataaaatgtttactagAAACGGGTATGTAAAAATTCATATGAGGATCCATACTGGAGAAAAGCCGTATgaatgtaatttatgtaatcaaaaatatgcacACAGAGGAGGTTATGACATTCATATGCAAAATCATGCCGGGATGAAACCGCACAAATGTGATTTATGTAATGTATCATTTAGTTTAAAAGGCCATTTGAAAAGACATATGTTGACTCATATCAATAAAAGAGAAAAGTCATTTGTTTGTGACATTTGTAATAAGTCTTACTATAATAGTTCACATTTGAAAAGACACAAATGGCTTCATGCTGCAGAAAAGCCTTATAAATGCACTATCtgtcataaaacattttcagacACGAGCCATCTTAAAACACACATAAGAATTCATACTGGTGAAAAGCCTTTTAAATGTGAAATCTGCAATAAatcttttattgtaaaatcaagtTTGACAATACATATGATGAATCATACAGGGTTGAAACCTCACAAATGTAAAGACTGTTTTAAGACATTCAGTAATATGACACGACTGAAAGCACATATGTCAGTTCATACAGGAGAAAAACCATTCAAATGTAGCATctgtcataaattatttactaaatcaaCCAATTTACAGTACCATATgatgaaacataaaaatgaaaatccaCATAAATGTACCATATGCAATAAAACTTTCGCAATcgcatcatttttaaaaagccATATGGTTATTCATTCTTCCAACAAGccttataaatgtaatgtttgtGATAAAGTATTTTCCCAggcaatacatttaaaagttcATACTAGAACGCATACTGGTGAAAAACCTTACAAATGTGATGTTTGTTACAAATCATTTTCGGTATCTAATTCTTTAACTTTACACAAGAGAACTCATACTGGGGAAAAGCcatataaatgtgaaatatGTGATTATAAATGCACAACATCTTcttcattaataattcataacagATTTCATGCTGGGAAAAAGCCTTACAGTTGCGATATATGTAACAAGGCATTTATTGCTACTTcacttttaaatgtacataaaaagaAACATACAGGAGAAAAACCGTTTAAATGTGACCTATGttctaaaacatttattcaaaaatcttCTATAAAAATGCACATTATGAGTTTTCATTCTAAATCCAGACCCTTTAAGTGTGATGTTTGTAAGAACTCATATGCTTCAAgatcaattttgaaattacataTGAGAATACACACTGGAGAATCCCCTTTTACCTGTGGTATCTGTAATCAATCATTTCGTCATAAACCACTATTGAaaagtcatattataaacCATACAGGAGAAAAAGCTTATAAGTGtaaaatttgttcaaaaatgtttactcaTAACTCAGGTGTCAAAATGCACATGAGAATTCATACCGGTGAAAAACCATATAAGTGTGATATATGTATGAGAGAATTCCGTTATAAAGGAAGTTTTGATATTCACATGGCCCAGCATACTGGGTTAAAACCCTATAAATgtgatatatgtaataaagcCTTTGCTGTGAAATCAAGATTGATTCGCCATATGAATATTCataatagtgat
Protein Sequence
YDYILNSSRQLIIPLNRCDNLLNCPSNIVIKQEFIAKTDYHNDSQLLQIGTARETGEKVNTNDTDIKIENDYIDNNVFESIVVKEDHSSNLLENTLTCKLCCKKFTDEFSMRRHMQIYRRKPTFTCDICKQSFHQKPRLIAHILNHTEDKSNKCSICNKMFTRNGYVKIHMRIHTGEKPYECNLCNQKYAHRGGYDIHMQNHAGMKPHKCDLCNVSFSLKGHLKRHMLTHINKREKSFVCDICNKSYYNSSHLKRHKWLHAAEKPYKCTICHKTFSDTSHLKTHIRIHTGEKPFKCEICNKSFIVKSSLTIHMMNHTGLKPHKCKDCFKTFSNMTRLKAHMSVHTGEKPFKCSICHKLFTKSTNLQYHMMKHKNENPHKCTICNKTFAIASFLKSHMVIHSSNKPYKCNVCDKVFSQAIHLKVHTRTHTGEKPYKCDVCYKSFSVSNSLTLHKRTHTGEKPYKCEICDYKCTTSSSLIIHNRFHAGKKPYSCDICNKAFIATSLLNVHKKKHTGEKPFKCDLCSKTFIQKSSIKMHIMSFHSKSRPFKCDVCKNSYASRSILKLHMRIHTGESPFTCGICNQSFRHKPLLKSHIINHTGEKAYKCKICSKMFTHNSGVKMHMRIHTGEKPYKCDICMREFRYKGSFDIHMAQHTGLKPYKCDICNKAFAVKSRLIRHMNIHNSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00136301; iTF_00135582;
90% Identity
iTF_00135582;
80% Identity
-