Agly008572.1
Basic Information
- Insect
- Aphis glycines
- Gene Symbol
- egg
- Assembly
- GCA_009928515.1
- Location
- scaffold:123542-127640[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3 6.4e+03 -3.0 0.0 45 69 566 585 565 589 0.74 2 2 6.7e-10 3.2e-06 26.8 0.0 6 71 598 657 593 661 0.81
Sequence Information
- Coding Sequence
- ATGGCTTCACCTAGTAAAAGTTTGGGACCATACAAAATTAGTGAAGAAGATTTAGAGGTACAGAGACGCCAACTTAGATGTATCAACAGGCGATGTAGGTATGGTGATACTCTAATCGATGCATTGGAACTAGCGTGTGCTTACTATGATATTGATTACAAGCCAGGCAGAGAGGTTTGCATCACATGTTTTACCAAATGTCTTAAACATTATAAGTATCTCGAAACAAAATGGAAGGAGGGAAAATGTATTATGGATTCCAGTTTTCCAAATTATGATTCATATTTACTTATTGATGATTCATCATGTGATGAAGATGATGACGATGACGATGAGCCAAGACCTGGTACTTCTAGGGATGGTTTACCTGCTGATGAAGATGTTAAAAATGCTATTGGTAGTGCAATCACGCATTATTTTAATAAAAACAAATTTCTCTTTGATCATCAAGTTAAATTATGTGATGACTATATTACTCGGGGAATAACCAAATGTTTGACTGATGCAGATGCAATTGATCAAGTTGCTTCTCAGTTAGAAGATGAAATGAAATTATTAAGGGAAGAATTATATAAACCATATCAACCAGTTATAACAACCTTAGATCCTGTAGAAATAAGTGATTTGGAGGAGGAATTAGAAGAGGAAAATGAACACCTTGAAACACCTAAAGAAGAAGTTCAGTATCCTGATGAAGAAATCATTACAAATCAAGAAGCTAAAAGACTTAAATTAGATAAATCTGATAAAGAAGATGTTATCGCTATTAATAGCACTGTTTTTCATACACCATCTCATGTACCTATGGAAGGGTCTTTAGAATATCCTTCTATTGATGATGGACAAACTGTATATGGAATGAAGTTAACTTTATTACAACCATGGTATAGATGTAAGATAAAAAGTTTAATTAACTATGATTATGTACACATCAAATTTGAAAACGATGAAAAGTTAGTGACAACAAAGGAAATTGCTTATTGTACACTGAATCCAGTGAGATTTCCTGTGGGTTGCAGAGTAATTGCTAAATATACAGATCCCAATTCTAAAAATGTTGAATTTTATGCTGGTATAATAGCTGAACCACCTAAAATGCTTAATGTATTTCGTTATTTGATTTTTTTCGATGCTGGTTATGTTCAATATCGACGACATCAAGATATCCGTTTAATTGCACGCAAATCAAATCAAGTATGGAATGATATACACCCGGATTCAAAAGAATTTATAAAAAGTTATTTAGAAAAATATCCTGAACGTCAAATGGTTAAGTTGACTATTCAACATTCAGTCCGAGCAGAATATCAAAACCAGTGGCAGATGGCAAAAGTGCTTGAAGTTGATGCATCTTTGGTTAAATTATATTTTCCAGAATTCAAACACAGTGAATGGCTTTATCGTGGTTCTTCACGTTTGTATAATATTTTTGAAAAACAAACGAAGTTTGAGAGAGGCATTCGATTAAGGCAATCTGGACTCGCTTATTTAAATAAACCATTTGTAGAATTTACAAGTGTTGAAGAAGAACCTTGCCGTAATTTAGCAAAAAATAATGGTAATGTAGCTCGTAAAAGTACCAGCAAAACTCCAACACAAGGGGATGGAACTACAGGTGATGGAACTAGTTTTAATAATAAATGTACTAAAATTAAGGCTAATTTCTCCAAGATTATTGATATTATATTGCCTAAAAGTGTTCCCAATCCAATTACTTATATTAAACACAAATGTAATCCTTCATGTATTGCATGGACAGCATATAACTATGAGAGAACACGACAAATCAGCATGTTGACTATTCCTTTACATTTTGGTTTTGTCAGATATCTGACATTATTTAATAACTGTCATAAACATATCCTATACAGAACTCCGTGTGGTCTTACTATTCGAAACATGAAACAGATGCTGGAATATCTTATTGTTACCAAAAGCAAAATGACTATTGACCAATTCGATTTTAATAGTTGGGTCAATCCATTTTCAGAATTTAAAATTATAAAACATGTGCAATTTTTAAAAGATATATCTGAGGGTAAAGAATTTAGAAGCATACCATGTGTGAATACACTTAACAGTATATTACCACCAAAAATGGATTATATGACTGCTAGACAACCAATGCCAGGTGTTAGCATAAATGTAGAGAGTGATTTCTTATGTGGTTGTGACTGTACTGACAACTGCCAAGACAAATCGAAATGTGCTTGTTGGCAGATGACTATCGATGGACAAAAGATTTTACCTAATCTATACAAAGACCCTAATATTGGTTACAGTTATCGAAGATTACCCGAACGAGTCTTAACTGGTATATACGAATGCAATAAAACATGTAAATGTTCTAGTTCTTGTTTAAATCGTGTTGTACAGAACCCATTGTCACAAAAATTACAATTATTCATGACGGAGAAAAAAGGATGGGGTGTACGATGTTTAAACGATATACCTCAAGGAAGTTTCATATGTATTTATGTTGGTTGTTTGTTAACTGAAACTGATGCTAATGAAGGTGGCGTAAATTATGGCGATGAATATTTAGCGGAGTTAGATTATATTGAAGTTGTTGAAAAAATAAAAGAAGATTATGAAAGTGATATACCTATAAGTGACTGCGAGGATGATGCTGAGAAGAATCTATCCGAATCGTCTGATGATCAATATCCTAGTACATCTGATGGCAAAAGAACTGAAATGCAACTAAGGTTACGGAAACGCAAAAAATCAAAAACTAAAAAAGATGATAAACAGGTACATGTTCCATCTAAACTAAATGATTTGAAAAACAACCCTGTATCTTCAAAATCAATGCGTGAATATTTTGGAAATAACGAGAGTGTATATATCATGGATGCCAAAACTCGGGGCAACATTGGACGTTATTTAAATCATTCATGTTGTCCAAATACATTTGTCCAAAATGTATTTGTGGATACACATGACTTGAGATTTCCATGGATATCATTTTTTGCACTCCATTACATACAAGCTGGAACAGAACTAACTTGGGATTATAGCTATGATATAGGAAGTGTTCCAGGAAAAAATTTGAAATGTCATTGTGAGGCAATGTTCTGTAGAGGGAGATTACTTTAA
- Protein Sequence
- MASPSKSLGPYKISEEDLEVQRRQLRCINRRCRYGDTLIDALELACAYYDIDYKPGREVCITCFTKCLKHYKYLETKWKEGKCIMDSSFPNYDSYLLIDDSSCDEDDDDDDEPRPGTSRDGLPADEDVKNAIGSAITHYFNKNKFLFDHQVKLCDDYITRGITKCLTDADAIDQVASQLEDEMKLLREELYKPYQPVITTLDPVEISDLEEELEEENEHLETPKEEVQYPDEEIITNQEAKRLKLDKSDKEDVIAINSTVFHTPSHVPMEGSLEYPSIDDGQTVYGMKLTLLQPWYRCKIKSLINYDYVHIKFENDEKLVTTKEIAYCTLNPVRFPVGCRVIAKYTDPNSKNVEFYAGIIAEPPKMLNVFRYLIFFDAGYVQYRRHQDIRLIARKSNQVWNDIHPDSKEFIKSYLEKYPERQMVKLTIQHSVRAEYQNQWQMAKVLEVDASLVKLYFPEFKHSEWLYRGSSRLYNIFEKQTKFERGIRLRQSGLAYLNKPFVEFTSVEEEPCRNLAKNNGNVARKSTSKTPTQGDGTTGDGTSFNNKCTKIKANFSKIIDIILPKSVPNPITYIKHKCNPSCIAWTAYNYERTRQISMLTIPLHFGFVRYLTLFNNCHKHILYRTPCGLTIRNMKQMLEYLIVTKSKMTIDQFDFNSWVNPFSEFKIIKHVQFLKDISEGKEFRSIPCVNTLNSILPPKMDYMTARQPMPGVSINVESDFLCGCDCTDNCQDKSKCACWQMTIDGQKILPNLYKDPNIGYSYRRLPERVLTGIYECNKTCKCSSSCLNRVVQNPLSQKLQLFMTEKKGWGVRCLNDIPQGSFICIYVGCLLTETDANEGGVNYGDEYLAELDYIEVVEKIKEDYESDIPISDCEDDAEKNLSESSDDQYPSTSDGKRTEMQLRLRKRKKSKTKKDDKQVHVPSKLNDLKNNPVSSKSMREYFGNNESVYIMDAKTRGNIGRYLNHSCCPNTFVQNVFVDTHDLRFPWISFFALHYIQAGTELTWDYSYDIGSVPGKNLKCHCEAMFCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305559;
- 90% Identity
- iTF_00134272; iTF_00136128;
- 80% Identity
- -