Acrc002939.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- -
- Assembly
- GCA_009835225.1
- Location
- VUJU01006408.1:6201-9595[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0082 0.92 10.8 0.2 1 23 170 193 170 193 0.93 2 13 3.9 4.4e+02 2.4 3.0 1 20 202 221 202 222 0.85 3 13 0.0053 0.59 11.4 4.9 3 23 244 264 244 264 0.98 4 13 0.058 6.5 8.1 1.4 1 23 375 398 375 398 0.93 5 13 0.032 3.6 9.0 0.5 1 23 405 428 405 428 0.93 6 13 0.00037 0.042 15.0 7.0 1 23 433 455 433 455 0.98 7 13 3e-05 0.0033 18.5 0.2 1 23 459 481 459 481 0.97 8 13 0.00024 0.027 15.6 0.4 1 23 487 509 487 509 0.98 9 13 0.0019 0.21 12.8 2.1 1 23 515 537 515 537 0.99 10 13 4e-05 0.0045 18.1 0.3 1 23 543 565 543 565 0.98 11 13 0.0017 0.19 13.0 0.3 1 23 571 593 571 593 0.98 12 13 3e-06 0.00033 21.6 0.8 1 23 599 621 599 621 0.99 13 13 0.077 8.6 7.8 5.9 1 21 627 647 627 648 0.94
Sequence Information
- Coding Sequence
- atgaaaaacaaatttgactTAGACTTTAATGTACTCTGTAGGCTTTGCCTGCATAAAGGACCTGAACTACGTTCAATTTTTGATTGTGATTTTTCTTACCGCATCGAGTCATGTGTGGGAATAGTAATACAGCAATGTGATCTGGGGCCAGCCCATATGTGCGTTAATTGTCTGAGTAATTTAGAGAATTGGGAagaattcaaacaaaaatgtatatcttcAAATGAATGTATTCAAAATTGCATCAAGCAGTTGGAAGAagagaaattaaatatgactGTAGATAATTCTATTAAGCATGTAGaacaattagaaataaatgaacAAGAAAATAATCATGATAGTATGTTAAATGACGAATTTAACAATCAAGACTCTGATAATGATTCATCAAAATCTAAGTCATCCATTTCACCAATAaCAAGAAAAGTCTACTCAAGAGCTGTTAAAAAAGAAGTAAATGCTTTTGAAGTGGCAAATACTAAAACATCTAATAAGAAAAAACGTTACGAGTGTGGAATGTGTTCTATAGATTTCACTGAAAAAGAAACATTATACAACCACTTAATAGATTCCCATAAATTAGAAGAGAATAATACCCCACACTATTGTTTAATTTGCAATAAAggatattgtaattataaaatttatcaaaatcattTGACTGCTGAACAAGATATTCATGGATCCATTCAAACTCAGGATAAAGTCAAAGACTGTGCAATTGGCTGTGGACTATGTACTTGTAAATTTAGTCGGTCGACCAGCCTTTACCGTCATCTCAGAAACCATGCATTGAAAAAAGACGTTATGCCCCATTTGTGTTCATTTTGTCAAGTGGGATTTCTCGACACATACAGTCTTTACTTGCACGCATCGACTGAACATCACGCAGCATCTGTCATTGTTAACgaatcaaaaaaaGAATGTTCTGACGCGTCAACCATTCTCAAACAAGAGGAGGAATTGTGCGGCAAAACTACGGACAACGACACTGTTGGTGACGAATACAGGGATAACAAGTACGCGATCACCACCaaacgtaaaattaaaaagctcAAGACGGTCGAGGACAAGCGAGCCAAGTATCGCGAGCACTACAGGCGGTTCCAGTCGAAGACGTACGCGTGCGAATTCTGCGACGTCGCCTATTCCCGGTTCTGCGACCTGTTCAACCACGACCGTACCGCCCACGACGACATGCCCAAAGAGTTCAGCTGCCCCACGTGCGGCAAACTGTTCCTGACGGACAGCCGGCTGCAGATCCACCGGAACGCGTTCCACGCGGAGAAGGCGTTCAGCTGCGACGTGTGCAACGTTCGGTGCAAGTCCAAGCACACGTTGCGCACGCACATGCGCAAGCACAGCGGCGTGTTCGCGTGCTCGCACTGCGGCCTGACGACGGCCAGCAACGCGGCACTGGTGTCCCACATGCGCATACACACCGGCGAGAAGCCGTTCGTGTGCGACCTGTGCGGCAACTCGTACGCGTCCAAGCTGGGGCTCACGTCGCACAAGCGCACCCACCAGCAAGAGGCGCTGTTCAAGTGCAACGTGTGCGGTTACACCGGTTCCAGTCACAGTTCCATATACATACACAGGCAGACGCACAACTCGGACAAGCCGTTCGTGTGCGACGTGTGCGGCAAGACGTTCAAGATCAAGGTGCGGCTGGTCGACCACCAGAAGATCCATTTCGCGTCCAAGGACTACGTGTGCGAGGTGTGCAACAAGGCTTTCCTGGCTCGGTACCAGCTGGTCCAGCACTCGCGAACCCACTCGGGCGAAAAACCGTTCCAGTGCCATCTGTGCGCCAAGGCGTTCGCCCGGCGAGACGGCCTGTCCGAGCACATCAGGACGCACACCGGCGAGAAACGGTACACGTGCACCGAGTGCTTCAGGACGTTTTCGTTCTACAAGAGCATGAAGAATCACAAGTGTTCGGCGGCCACTGTCGGCGACGGCGTCGGCGATGGAGGTGACGACGATGTCAACGGCTACGCGGCTGATGTGGCGGATAACGTTGTCTGCGACGGTGTAGAGACCGCGACGGATCCGTTGCCGTCCGCCTCTTTGCAAATACCCACCGAAGACAGCGGATCGTTGGACCCGTCTTATCGATCTGCCGTTGGAGCCAACGGTAGCAGCGGTGTACCATCGTTTCCCGACAGTTGTAGTTTACCCACCAGTTGGACGCCCAGTTAA
- Protein Sequence
- MKNKFDLDFNVLCRLCLHKGPELRSIFDCDFSYRIESCVGIVIQQCDLGPAHMCVNCLSNLENWEEFKQKCISSNECIQNCIKQLEEEKLNMTVDNSIKHVEQLEINEQENNHDSMLNDEFNNQDSDNDSSKSKSSISPITRKVYSRAVKKEVNAFEVANTKTSNKKKRYECGMCSIDFTEKETLYNHLIDSHKLEENNTPHYCLICNKGYCNYKIYQNHLTAEQDIHGSIQTQDKVKDCAIGCGLCTCKFSRSTSLYRHLRNHALKKDVMPHLCSFCQVGFLDTYSLYLHASTEHHAASVIVNESKKECSDASTILKQEEELCGKTTDNDTVGDEYRDNKYAITTKRKIKKLKTVEDKRAKYREHYRRFQSKTYACEFCDVAYSRFCDLFNHDRTAHDDMPKEFSCPTCGKLFLTDSRLQIHRNAFHAEKAFSCDVCNVRCKSKHTLRTHMRKHSGVFACSHCGLTTASNAALVSHMRIHTGEKPFVCDLCGNSYASKLGLTSHKRTHQQEALFKCNVCGYTGSSHSSIYIHRQTHNSDKPFVCDVCGKTFKIKVRLVDHQKIHFASKDYVCEVCNKAFLARYQLVQHSRTHSGEKPFQCHLCAKAFARRDGLSEHIRTHTGEKRYTCTECFRTFSFYKSMKNHKCSAATVGDGVGDGGDDDVNGYAADVADNVVCDGVETATDPLPSASLQIPTEDSGSLDPSYRSAVGANGSSGVPSFPDSCSLPTSWTPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305891; iTF_00973252; iTF_01305065; iTF_01329238; iTF_00136346; iTF_00463554; iTF_01038695; iTF_01304392; iTF_01032395; iTF_00184805; iTF_01033242; iTF_00019661; iTF_00942137; iTF_01167934;
- 90% Identity
- iTF_01305891;
- 80% Identity
- -