Basic Information

Insect: Aulacorthum solani
Gene Symbol: -
Assembly: GCA_008528875.1
Location: PVMI01087320.1:1883-4413[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.059 11 7.6 0.2 3 23 172 193 170 193 0.92

2 14 0.89 1.8e+02 3.9 2.1 1 21 202 222 202 223 0.87

3 14 0.0017 0.33 12.5 3.8 3 23 244 264 243 264 0.98

4 14 9.3 1.8e+03 0.7 0.9 3 23 275 296 273 296 0.91

5 14 0.04 7.8 8.2 1.4 1 23 377 400 377 400 0.93

6 14 0.011 2.1 10.0 0.5 1 23 407 430 407 430 0.94

7 14 0.00026 0.05 15.0 7.0 1 23 435 457 435 457 0.98

8 14 4.6e-05 0.0091 17.4 0.3 1 23 461 483 461 483 0.98

9 14 0.00017 0.033 15.6 0.4 1 23 489 511 489 511 0.98

10 14 0.0013 0.26 12.8 2.1 1 23 517 539 517 539 0.99

11 14 2.8e-05 0.0055 18.1 0.3 1 23 545 567 545 567 0.98

12 14 0.0011 0.22 13.0 0.3 1 23 573 595 573 595 0.98

13 14 6.6e-07 0.00013 23.2 1.5 1 23 601 623 601 623 0.99

14 14 0.046 9 8.0 5.4 1 20 629 648 629 650 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.059	11	7.6	0.2	3	23	172	193	170	193	0.92
2	14	0.89	1.8e+02	3.9	2.1	1	21	202	222	202	223	0.87
3	14	0.0017	0.33	12.5	3.8	3	23	244	264	243	264	0.98
4	14	9.3	1.8e+03	0.7	0.9	3	23	275	296	273	296	0.91
5	14	0.04	7.8	8.2	1.4	1	23	377	400	377	400	0.93
6	14	0.011	2.1	10.0	0.5	1	23	407	430	407	430	0.94
7	14	0.00026	0.05	15.0	7.0	1	23	435	457	435	457	0.98
8	14	4.6e-05	0.0091	17.4	0.3	1	23	461	483	461	483	0.98
9	14	0.00017	0.033	15.6	0.4	1	23	489	511	489	511	0.98
10	14	0.0013	0.26	12.8	2.1	1	23	517	539	517	539	0.99
11	14	2.8e-05	0.0055	18.1	0.3	1	23	545	567	545	567	0.98
12	14	0.0011	0.22	13.0	0.3	1	23	573	595	573	595	0.98
13	14	6.6e-07	0.00013	23.2	1.5	1	23	601	623	601	623	0.99
14	14	0.046	9	8.0	5.4	1	20	629	648	629	650	0.94

Sequence Information

Coding Sequence: atgaaaaacaaatttgaccTGGACTTTAATGTACTCTGTAGGCTTTGCCTGCACAAAGGGCCTGAACTGCGTCCGATTTTTGATTGTGATTTTTCTTACCGCATCGAGTCGTGTGTGGGAATAGTAATACGGCCGTGTGATCTGGGGCCAGTCCATATGTGCGTAAACTGTCTGagtaatttagaaaattgggaagaatttaaacaaaaatgtatatcttcCAACGAATGTATTCAAAACTGTATCAAGCAGTTGGAAGAagagaaattaaatttgactgTAGATAATTCTATTAAGCTCGAAGAACAACTAGAAATAGATGAACAGGAAGATATTCACGACAGTACGTTCAACAACGAATTTAACAATCAAGACTCTGATAATGATTCGTCAGAATCTAAGTCCCCCATTTCACTAACAacaCGAGAAGTCTACTCGAGAGCTGTTAAAAAAGAAGGGAAGGCCTTTGAAGtggtaaatactaaaacatCTAATAAGAAAAAACGATATGGGTGTGGAATGTGTTCTATAGATTTCACTGAAAAAGAATCACTGTACAACCATTTAATAGATTTCCATAAATTCGAAGACAATAACACCCCACATTACTGTCTAATATGCAATAAAGGATATtgtaactatacaatttatcaaaatcatttGATTACTGAACAAGATATTCACGGATCCATTCAAATTCAGGATAAAATTAAAGACTGTACAATTGGTTGTGGACTATGTACTTGTAAATTCAGCCGGTCGACCAGTCTCTATCGTCATCTCAGAAATCATGCATTGAAAAAAGAACTTATGCCTCATTTGTGTTCATTTTGTCAGGTGGGATTTCTTGACACTTACAGTCTATACTTGCATGCATCAACCGAACATCAAGCTGCATCAGTCACTGTAAATGAatctaaaaaaGAATGTTCTGATGTGACAACCATTCTTAACCAAGGGGGAGAATTATGTGGCAAGATGACTATGGCCAACGACATTGCAGTTGATGAAGAGTACAAGGACAACAAATACGCCATCACTACCAAGCGTAAAATCAAAAAGCTCAACACTTTGGAGGACAAGCGAGCAAAGTATCGCGAACACTACAGGCGGTTTCAGTCAAAGACTTATGCATGTGAATTCTGCGACGTTGCCTATTCCCGGTTCTGTGACCTGTTCAACCATGACCGTACAGCCCATGACGACATGCCCAAAGAGTTCAGCTGCCCTACTTGCGGCAAATTGTTCTTGACGGACAGCCGGTTACAGATCCACCAAAATGCGTTTCATGCCGAGAAGGCGTTTAGCTGTGACGTTTGCAACGTGCGGTGCAAGTCTAAGCACACACTGCGTACACACATGCGCAAGCACAGTGGCGTGTTTACTTGCACACACTGTGGTCTGACAACAGCCAGCAACGCAGCTCTTGTGTCACATGTGCGCATACACACTGGCGAAAAGCCGTTTGTGTGTGATCTATGCGGCAACTCATATGCGTCCAAGCTGGGGCTCACATCGCACAAGCGCACCCACCAACAAGAGGCGCTGTTCAAGTGCAATGTATGTGGGTATACAGGTTCCAGCCATAGTTCCATATACATACACAGGCAGACGCACAACTCGGACAAGCCGTTTGTGTGTGATGTGTGTGGTAAAACATTCAAGATCAAGGTGCGGCTAGTCGACCACCAAAAAATACACTTCGCGTCCAAGAACTATGTGTGCGAGGTGTGCAACAAGGCATTTCTGGCCCGGTACCAGTTGGTACAGCACTCACGTACCCATTCGGGTGAAAAACCATTCCAGTGCCATTTGTGCACCAAGGCGTTTGCCCGGCGAGATGGGCTGTCAGAGCACATCAGGACACACACAGGCGAGAAACGGTACACGTGCACAGAGTGCTTTCGCACATTTTCGTTCTACAAGAGCATGAAGAATCATAAATGTTTGGTGACGACTAGTGGTGGtgacgatgacgatgatgataaCGGTAATAAGGATAACGTCTGCAACACTGGTGGGGTGGAGACAATGACAGATCCAATACCTTCTTCCTCATTGCGAATGACTACTGAAGACAACGTGTCCACGTTAGAACAGTCTTATCAATCTACTGTTGGAGTCAGTAACAGCAGCAGTGGTGTTCCAGCATTTCCCATCAGTTGGACACCTAGTTAG
Protein Sequence: MKNKFDLDFNVLCRLCLHKGPELRPIFDCDFSYRIESCVGIVIRPCDLGPVHMCVNCLSNLENWEEFKQKCISSNECIQNCIKQLEEEKLNLTVDNSIKLEEQLEIDEQEDIHDSTFNNEFNNQDSDNDSSESKSPISLTTREVYSRAVKKEGKAFEVVNTKTSNKKKRYGCGMCSIDFTEKESLYNHLIDFHKFEDNNTPHYCLICNKGYCNYTIYQNHLITEQDIHGSIQIQDKIKDCTIGCGLCTCKFSRSTSLYRHLRNHALKKELMPHLCSFCQVGFLDTYSLYLHASTEHQAASVTVNESKKECSDVTTILNQGGELCGKMTMANDIAVDEEYKDNKYAITTKRKIKKLNTLEDKRAKYREHYRRFQSKTYACEFCDVAYSRFCDLFNHDRTAHDDMPKEFSCPTCGKLFLTDSRLQIHQNAFHAEKAFSCDVCNVRCKSKHTLRTHMRKHSGVFTCTHCGLTTASNAALVSHVRIHTGEKPFVCDLCGNSYASKLGLTSHKRTHQQEALFKCNVCGYTGSSHSSIYIHRQTHNSDKPFVCDVCGKTFKIKVRLVDHQKIHFASKNYVCEVCNKAFLARYQLVQHSRTHSGEKPFQCHLCTKAFARRDGLSEHIRTHTGEKRYTCTECFRTFSFYKSMKNHKCLVTTSGGDDDDDDNGNKDNVCNTGGVETMTDPIPSSSLRMTTEDNVSTLEQSYQSTVGVSNSSSGVPAFPISWTPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00134788;
90% Identity: iTF_01032395;
80% Identity: -