Basic Information

Insect: Diuraphis noxia
Gene Symbol: -
Assembly: GCA_001186385.1
Location: NW:1169472-1172865[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0016 0.11 12.5 0.9 1 23 174 197 174 197 0.94

2 13 0.35 24 5.1 3.3 1 21 206 226 206 227 0.91

3 13 0.0015 0.11 12.5 3.7 3 23 248 268 247 268 0.98

4 13 0.017 1.2 9.3 3.2 1 23 381 404 381 404 0.94

5 13 0.02 1.4 9.0 0.4 1 23 411 434 411 434 0.92

6 13 0.00024 0.017 15.1 7.0 1 23 439 461 439 461 0.98

7 13 4.4e-05 0.003 17.4 0.3 1 23 465 487 465 487 0.98

8 13 0.00016 0.011 15.6 0.4 1 23 493 515 493 515 0.98

9 13 0.0012 0.085 12.8 2.1 1 23 521 543 521 543 0.99

10 13 2.6e-05 0.0018 18.1 0.3 1 23 549 571 549 571 0.98

11 13 0.00059 0.041 13.8 0.2 1 23 577 599 577 599 0.98

12 13 5.7e-06 0.00039 20.2 1.3 1 23 605 627 605 627 0.96

13 13 0.05 3.4 7.8 5.9 1 21 633 653 633 654 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0016	0.11	12.5	0.9	1	23	174	197	174	197	0.94
2	13	0.35	24	5.1	3.3	1	21	206	226	206	227	0.91
3	13	0.0015	0.11	12.5	3.7	3	23	248	268	247	268	0.98
4	13	0.017	1.2	9.3	3.2	1	23	381	404	381	404	0.94
5	13	0.02	1.4	9.0	0.4	1	23	411	434	411	434	0.92
6	13	0.00024	0.017	15.1	7.0	1	23	439	461	439	461	0.98
7	13	4.4e-05	0.003	17.4	0.3	1	23	465	487	465	487	0.98
8	13	0.00016	0.011	15.6	0.4	1	23	493	515	493	515	0.98
9	13	0.0012	0.085	12.8	2.1	1	23	521	543	521	543	0.99
10	13	2.6e-05	0.0018	18.1	0.3	1	23	549	571	549	571	0.98
11	13	0.00059	0.041	13.8	0.2	1	23	577	599	577	599	0.98
12	13	5.7e-06	0.00039	20.2	1.3	1	23	605	627	605	627	0.96
13	13	0.05	3.4	7.8	5.9	1	21	633	653	633	654	0.94

Sequence Information

Coding Sequence: AtggttaaaatgaaaaatatatttgatctgGACTTTAATGTACTCTGTAGGCTTTGTCTGCATAAAGGGCCTGAACTGCGTCCGATTTTCGATTGCGATTTTTCTTACCGTATCGAGTCGTGTGTAGGAATAgtaATACGACAGTGTGATCTGGGGCCGGCTAATATGTGTGTCAATTGTTTGAGTAATTTAGAAAATTGGGaagaatttaaacaaaaatgtatatcttCAAATGAATGTATTCAGAACTGTATCAAGCAGTTGGAAGAagagaaattaaatttagtagATAATTCTATTAAGCTCGAGGATCAACTAGAAACAGATGAACAGGAAAATATTCATGACAGTACGTTCAACAACGAATTTAACAATCAAGACTCTGATAATGATTCGTCAAAATCTAAGTCGGCCATTTCACTAACAaCACATGAACATGAAGTCAATTTGAGTACTGTTAAAAAAGAAGAAACCGCCTCAGAAGTCACAAATACTAAAACATCTATTAAGAAAAAACGTTACAAGTGTGGCATGTGCTTTATACATTTCActgaaaaagaaaatttgtaTGACCATTTAATAGAGATCCATAAATTAGAAGAAAATAACACCCCACATTACTGTCTAATATGCAATAAAGGATATTGTAACTattcaatttatcaaaaacatttaactaCTGAACAAGATATTCATGGGTCCATTCAAATtctgGATAAAATTAAAGATTGTACAATTGGTTGTGGACTATGTTCTTGTAAATTCAGCCGGTCGACCAGTCTCTATCGTCATCTCAGAAATCATGCATTGAAGAAAGATGTTATGCCTCATTTGTGTTCATTTTGCCAGGTGGGATTTCTTGACACATACAGTCTATACTTACATGCATCAACAGAACATCACGCTGCATCAGTCACTGTAAATGAatctaaaaaaGAATGTTCTGAATTGACAACCATTCTTAGCCAAGGGGGAGAACTATGTGGCAATATGACTTTGGCCAATGACACTGCAGTTGATAGCGAGTACAAGGACAATAAGTATGCAATCACTATCAAGCGTAAAATCAAAAAGCTTAATACGGTGGAGGACAAAAGAGCAAAGTATCGCGAACACTATAGGCGGTTCCAGTCGAAGACATACACGTGCGAATTCTGTGACGTCACCTATTCCCGGTTCTGCGATCTGTTCAACCATGACCGTACTGCCCATGACAACATGCCCAAAGAGTTCAGCTGCCCCACTTGTGGCAAACTGTTCCTGACGGACAGTCGGCTACAGATCCACCAGAGTGCGTTCCATGCCGAAAAGGCATTCAGCTGTGATGTGTGCAACGTGCGATGCAAGTCTAAGCATACGCTGCGTACACACATGCGCAAGCACAGTGGTGTATTCACATGTACACATTGTGGCTTGACTACGGCCAGTAACGCGGCACTTGTGTCACACGTTCGCATACACACTGGCGAGAAGCCATTTGTATGCGATCTTTGTGGCAACTCTTACGCATCCAAGTTGGGGCTCACGTCTCACAAACGCACCCACCAGCAAGAGGCACTATTTAAGTGCAACGTGTGCGGGTACACGGGCTCCAGCCATagttctatatatatacataggcagACACACAACTCGGACAAGCCGTTTGTGTGTGATGTGTGTGGCAAGACGTTTAAGATCAAGGTACGGTTGGTTGACCACCAGAAGATACACTTTGCATCCAAGAACTACGTGTGTGAGGTGTGCAACAAGGCGTTTCTGGCTCGGTATCAGCTGGTCCAGCATGCTCGTACCCACTCGGGTGAAAAACCATTCCTGTGCCATTTGTGCACCAAGGCATTTGCCCGGCGAGATGGGCTATCAGAACACATTAGGACACACACAGGTGAGAAACGGTACACGTGCACAGAGTGCTTCCGCACATTTTCTTTCTACAAGAGCATGAAGAATCACAAGTGTTCGGTGGCAATTAGTGGTGGTAACAATGACGGTGATAATGTGGATAATGTTCGCAACACTGGTGGGGTAGAGACGAAAATAGATCCAATGCCTTCCAGTGTAATGCGAAWGACCACCGAAGACGACTTATCTATGTTGGACCAGTCTTACCGATCTACTATTGGAGCAAACACTGATGTTTCAGCATTTCCCGTTGAGTGGAAACCCAGTTAG
Protein Sequence: MVKMKNIFDLDFNVLCRLCLHKGPELRPIFDCDFSYRIESCVGIVIRQCDLGPANMCVNCLSNLENWEEFKQKCISSNECIQNCIKQLEEEKLNLVDNSIKLEDQLETDEQENIHDSTFNNEFNNQDSDNDSSKSKSAISLTTHEHEVNLSTVKKEETASEVTNTKTSIKKKRYKCGMCFIHFTEKENLYDHLIEIHKLEENNTPHYCLICNKGYCNYSIYQKHLTTEQDIHGSIQILDKIKDCTIGCGLCSCKFSRSTSLYRHLRNHALKKDVMPHLCSFCQVGFLDTYSLYLHASTEHHAASVTVNESKKECSELTTILSQGGELCGNMTLANDTAVDSEYKDNKYAITIKRKIKKLNTVEDKRAKYREHYRRFQSKTYTCEFCDVTYSRFCDLFNHDRTAHDNMPKEFSCPTCGKLFLTDSRLQIHQSAFHAEKAFSCDVCNVRCKSKHTLRTHMRKHSGVFTCTHCGLTTASNAALVSHVRIHTGEKPFVCDLCGNSYASKLGLTSHKRTHQQEALFKCNVCGYTGSSHSSIYIHRQTHNSDKPFVCDVCGKTFKIKVRLVDHQKIHFASKNYVCEVCNKAFLARYQLVQHARTHSGEKPFLCHLCTKAFARRDGLSEHIRTHTGEKRYTCTECFRTFSFYKSMKNHKCSVAISGGNNDGDNVDNVRNTGGVETKIDPMPSSVMRXTTEDDLSMLDQSYRSTIGANTDVSAFPVEWKPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00134788;
90% Identity: -
80% Identity: -