Basic Information

Insect: Aphidius gifuensis
Gene Symbol: PRDM10
Assembly: GCA_014905175.1
Location: CM026523.1:19796017-19800820[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0083 0.73 9.8 0.6 2 23 504 525 503 525 0.96

2 13 1.3e-07 1.2e-05 24.9 2.2 1 23 557 579 557 579 0.98

3 13 7.2e-06 0.00063 19.4 0.4 1 23 588 611 588 611 0.97

4 13 0.0037 0.33 10.9 0.1 2 23 626 647 626 647 0.96

5 13 0.00012 0.01 15.6 0.7 2 23 660 682 659 682 0.95

6 13 0.00058 0.051 13.4 3.9 1 23 709 731 709 731 0.97

7 13 0.0038 0.34 10.9 2.6 2 23 740 761 739 761 0.96

8 13 0.00037 0.033 14.1 0.3 1 23 768 790 768 790 0.98

9 13 8.8e-05 0.0077 16.0 3.3 1 23 826 848 826 848 0.98

10 13 0.00024 0.021 14.6 3.6 1 23 854 877 854 877 0.97

11 13 0.0013 0.12 12.3 1.7 1 23 959 982 959 982 0.97

12 13 2.4e-05 0.0021 17.8 2.4 1 23 1004 1027 1004 1027 0.97

13 13 0.0025 0.22 11.4 5.5 1 23 1064 1087 1064 1087 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0083	0.73	9.8	0.6	2	23	504	525	503	525	0.96
2	13	1.3e-07	1.2e-05	24.9	2.2	1	23	557	579	557	579	0.98
3	13	7.2e-06	0.00063	19.4	0.4	1	23	588	611	588	611	0.97
4	13	0.0037	0.33	10.9	0.1	2	23	626	647	626	647	0.96
5	13	0.00012	0.01	15.6	0.7	2	23	660	682	659	682	0.95
6	13	0.00058	0.051	13.4	3.9	1	23	709	731	709	731	0.97
7	13	0.0038	0.34	10.9	2.6	2	23	740	761	739	761	0.96
8	13	0.00037	0.033	14.1	0.3	1	23	768	790	768	790	0.98
9	13	8.8e-05	0.0077	16.0	3.3	1	23	826	848	826	848	0.98
10	13	0.00024	0.021	14.6	3.6	1	23	854	877	854	877	0.97
11	13	0.0013	0.12	12.3	1.7	1	23	959	982	959	982	0.97
12	13	2.4e-05	0.0021	17.8	2.4	1	23	1004	1027	1004	1027	0.97
13	13	0.0025	0.22	11.4	5.5	1	23	1064	1087	1064	1087	0.96

Sequence Information

Coding Sequence: ATGGATGATAGGGGCCCTCATAATGAGGGGGCCCCAATTGATCCACTTGATATTTCAATGATGGATAAAGCATCTGAATTATCTGAATGTTGGAATTCAACAAATTCACTTGGTACATTATCagaacatcatcatcaaattaaagctaacaataacaataataacaatcgattgttatatttaactgTTGAATATGTTGAGGAACAATCAAGAGATTATTCAAGAATGTTTCCAACATATGAACAAGTTATATATTCACCACGTCCAAATTCACCTCTATCAGATTTTGAACATCGTGTTAGTCCACTTGATCCAAATATGAGTTCAACAGCACGTTATTCACCAACACCAGTTCAATTACCACAAATACAATATCAAAATTCAGTTGTTGTATTACAAGATCAAACATCACCAATTATTGTACATGAAACTGATGATAATCAACGtgctaatattaattttataaatcaacaaaattcaaCACAAACAACACAATCAAATGTTAATGATGTTGAAGATTTTAATGTTGACAATACTAGCGATACAGAAGAACTTGTATCAAGTgttgcaaatgaattaatactCATGCAAAgtaataataatgaattagaAACAACAACAGCACCATTAATGCTAACTGAAATACCAGGTACTGATTTTACTCTTGCACGTGATTTTTTAGTAATGCATGATGAACAATTAAATGTCATGTCATCATTGagaaatcaaaataatgaaataacaaatgatgatACACTTGTTGTACATGAAGAATTaatgacaaatgaaaaaacaaatttacttgaacaaaatattattaatattgatgatattcaattgaaaattgatgatgataatttaattgtatctAAAACACAAACTGAtggagataataaaaatacaaaagtaaaattaaaacatcaaattaatgataaaaaaacatttcgaTGTGATGATTGTAATGCTGTTTGTCTTAAAGTTGGTGAATGCAGCTGTCAACATAATGTTTGTACAATTGCTGATCAACCAGTACCATCACGTGCAATAGCAACACTACCTGGttcatatttatcaataacaaaaattcaaacagGTAATGTAtgtgataatataatttatggtGTATTTGCTAAACGTAATATACGACGTCGTACACAATTTGGTCCAATTGAGGGTATTGTATGTACATATGATGGTAaaccatttttaaattgtttaccATTACTTTATGAAACAAATGTATatggtgaatttttaaaaattgatgtatcaaatgaaaattcatcaaattggATGCGTTTTGTACGTCCAGCATGTTATTATAaagaacaaaatttaataatatgcCAACAAAatgatggtattttttttttaacaactaaaaatatattaccaaATGAAGAATTAAAAGCTGGACCAAGTTTTGAATATGCATTACGTAGAAATCTTAAAATACTTGAACctgatattaatgaaaatacaattattcatgataaaaatattaatttacaatgttttgattgtaatgaatattttaataattcagaaatattaaaaaatcatttattaaatcatgataataataataatggtgaaacaagtaaaaataaaaatacaaatgaaaataaattatttaaaattattgatggacaaacaacacaaaatatttatacatgtcCACATTgtcgaaaaatatttccacGTAGTTATAGTTTAAAACGTCATAtgataatacataaaaatttaaaaaatcataataattatcaatgtaaTGAGtgtaatgaaatatttataaattcacaaaaattattaagacacataaaattaattcataatgataataaagaaaaagaaaattcacgtaaattaaataatgaatgtaaaatatgtaatttgatatttgataaattaccattattaaatttacatatgatacaacataataaaaatataattgataataaaaataaacaattacattGTCCAGAAtgtaatattgaatttaattatcaaaatgatttaataaaacatattacaaaattacatggtaaaaaaataaaacaatcaaaaacaacacaaaaaaataaaacaaaaaatgataataataataatatattatcatcacaTAAATGTACAATGTGTTATAAACGTTTTGCAACAAAAGTACGTTTACAACAACATTATCTTGTACATGGTTCAGATGATAAAAAACCATTACCatgtaatatttgttttaaaagatttatGAATAATTCAGCATTATCATGTCATTTAAAAACTCATTGTGaagataaacaaatatttgaatGTCCAATGTgtcgtaaattatttaatcaaatattacaattaaaagaTCATATTGAAACACATcgtaatgatgataatacatttaattgtCCATATTGTTTacgtcaaaaatttttaaaatattcagttATACGTAAACATATACTTGCTTATCACTGTGAAAGAAAACATAAATGTCAATATTGTAGTAAAACATTTccaacaattgataaattacgtATGCATTTATTACGTCATTCTGATTATCgtgaatttaaatgtaatgaatgttattcacaatttaaacgtaaagataaattaaaagaacacATGACAAGAATGCATAATTCACAAAGAATTATAAAAAgggaacaacaacaacaacaaaaatcacAACAAccacagcagcagcaacaacaacaacaacaacaaccacagcagcaacaacaatgTACACAGggtaataatgttaataataatattaatattagtaataataacaataacgtaaacaacaataacaacagcaacaataatgttaaaaaatttattccaaaAGTAAATCCAACAGATTATAatcgttttatttataaatgtcatACATGTTTAGTTGGTTTTAAAAGACGTGGTATGTTGGTTAATCATTTGGCTAAAAGACATCCAGATGTTCTACCTGAATCAATACCagaattaaatttaccaataTTACGTCAAACAcgtgattattattgtcaatattgtgataaagtatataaaagttcaagtaaaagaaaagctcatattatgaaaaatcatCCTGGTCAAACATTACCACCAAGTAATAgacaaaaagataataataatttaaatggttTAGAAAATTCAACATATTGTCAAACAGTTGgatcaataacaacaataccaCATAATTGTCAATGGTGTCATAAACAATATGCAAGTAAAgctaaattattacaacatcaacgtaaaaaacattcaaatttAATGGAACCAGCTGATAAAATACCACGTCAACGTAATCGTCCATCTGACAGTCAAAATCAACcaccaattaaaaatattaataataataatgttgatgatgaagatgatgatgatgatgaagatgaaaataatgataatgataattttataaaaacaaaaattattaaagctgatgatgttgatgatgttgttgataataatattgatattattggtgGACAATTTGTTAGAATGAGAGATATACGTtga
Protein Sequence: MDDRGPHNEGAPIDPLDISMMDKASELSECWNSTNSLGTLSEHHHQIKANNNNNNNRLLYLTVEYVEEQSRDYSRMFPTYEQVIYSPRPNSPLSDFEHRVSPLDPNMSSTARYSPTPVQLPQIQYQNSVVVLQDQTSPIIVHETDDNQRANINFINQQNSTQTTQSNVNDVEDFNVDNTSDTEELVSSVANELILMQSNNNELETTTAPLMLTEIPGTDFTLARDFLVMHDEQLNVMSSLRNQNNEITNDDTLVVHEELMTNEKTNLLEQNIINIDDIQLKIDDDNLIVSKTQTDGDNKNTKVKLKHQINDKKTFRCDDCNAVCLKVGECSCQHNVCTIADQPVPSRAIATLPGSYLSITKIQTGNVCDNIIYGVFAKRNIRRRTQFGPIEGIVCTYDGKPFLNCLPLLYETNVYGEFLKIDVSNENSSNWMRFVRPACYYKEQNLIICQQNDGIFFLTTKNILPNEELKAGPSFEYALRRNLKILEPDINENTIIHDKNINLQCFDCNEYFNNSEILKNHLLNHDNNNNGETSKNKNTNENKLFKIIDGQTTQNIYTCPHCRKIFPRSYSLKRHMIIHKNLKNHNNYQCNECNEIFINSQKLLRHIKLIHNDNKEKENSRKLNNECKICNLIFDKLPLLNLHMIQHNKNIIDNKNKQLHCPECNIEFNYQNDLIKHITKLHGKKIKQSKTTQKNKTKNDNNNNILSSHKCTMCYKRFATKVRLQQHYLVHGSDDKKPLPCNICFKRFMNNSALSCHLKTHCEDKQIFECPMCRKLFNQILQLKDHIETHRNDDNTFNCPYCLRQKFLKYSVIRKHILAYHCERKHKCQYCSKTFPTIDKLRMHLLRHSDYREFKCNECYSQFKRKDKLKEHMTRMHNSQRIIKREQQQQQKSQQPQQQQQQQQQQPQQQQQCTQGNNVNNNINISNNNNNVNNNNNSNNNVKKFIPKVNPTDYNRFIYKCHTCLVGFKRRGMLVNHLAKRHPDVLPESIPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGQTLPPSNRQKDNNNLNGLENSTYCQTVGSITTIPHNCQWCHKQYASKAKLLQHQRKKHSNLMEPADKIPRQRNRPSDSQNQPPIKNINNNNVDDEDDDDDEDENNDNDNFIKTKIIKADDVDDVVDNNIDIIGGQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00132176;
90% Identity: iTF_00132176; iTF_00131480;
80% Identity: -