Basic Information

Insect: Aphidius colemani
Gene Symbol: PRDM10
Assembly: GCA_030523065.1
Location: JAPYYR010003168.1:4725-8412[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.012 1 9.8 0.6 2 23 495 516 494 516 0.96

2 13 2e-07 1.6e-05 24.9 2.2 1 23 555 577 555 577 0.98

3 13 2e-06 0.00017 21.7 0.4 1 23 585 608 585 608 0.98

4 13 0.026 2.2 8.8 0.1 2 23 623 644 623 644 0.97

5 13 9.6e-05 0.008 16.5 0.2 2 23 657 679 656 679 0.95

6 13 0.00085 0.071 13.5 3.9 1 23 704 726 704 726 0.97

7 13 0.0098 0.82 10.1 2.0 2 23 735 756 734 756 0.96

8 13 0.00055 0.046 14.1 0.3 1 23 763 785 763 785 0.98

9 13 0.00013 0.011 16.1 3.3 1 23 821 843 821 843 0.98

10 13 0.00035 0.03 14.7 3.6 1 23 849 872 849 872 0.97

11 13 0.002 0.17 12.3 1.7 1 23 935 958 935 958 0.97

12 13 3.6e-05 0.003 17.8 2.4 1 23 980 1003 980 1003 0.97

13 13 0.0037 0.31 11.5 5.5 1 23 1040 1063 1040 1063 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.012	1	9.8	0.6	2	23	495	516	494	516	0.96
2	13	2e-07	1.6e-05	24.9	2.2	1	23	555	577	555	577	0.98
3	13	2e-06	0.00017	21.7	0.4	1	23	585	608	585	608	0.98
4	13	0.026	2.2	8.8	0.1	2	23	623	644	623	644	0.97
5	13	9.6e-05	0.008	16.5	0.2	2	23	657	679	656	679	0.95
6	13	0.00085	0.071	13.5	3.9	1	23	704	726	704	726	0.97
7	13	0.0098	0.82	10.1	2.0	2	23	735	756	734	756	0.96
8	13	0.00055	0.046	14.1	0.3	1	23	763	785	763	785	0.98
9	13	0.00013	0.011	16.1	3.3	1	23	821	843	821	843	0.98
10	13	0.00035	0.03	14.7	3.6	1	23	849	872	849	872	0.97
11	13	0.002	0.17	12.3	1.7	1	23	935	958	935	958	0.97
12	13	3.6e-05	0.003	17.8	2.4	1	23	980	1003	980	1003	0.97
13	13	0.0037	0.31	11.5	5.5	1	23	1040	1063	1040	1063	0.96

Sequence Information

Coding Sequence: ATGGATGATAGGGGCCCTCATAATGAGGGGGCCCCAATTGATCCACTTGATCCACTTGATATTTCAATGATGGATAAAACATCTGAATTATCTGAATGCTGGAATTCAACAAACTCACTTGGTACATTATCAGAACATCATCAAATCAAaactaacaataataacaatcgattattgtatttaactGTTGAATATGTTGAGGAACAATCAAGAGATTATTCAAGAATGTTTCCAACATATGAACAAGTTATATATTCACCACGTCCAAATTCACCTTTATTAGACTTTGAACATCGTGTTAGTCCACTTGATCCTAATATGAGTTCAACAGCACGTTATTCACCAACACCAGTTCAATTACCACAAATACAATATCAAAATTCAGTTGCTGTATTACAAGATCAAACATCACCAATCATTGTACATGATAATACACGTgctgatattaattttataaaccaaCAAAATTCAACACAAACAACTCAATCAAATGTTAATGATGTTGAAGATTATCATGTTGACAATACTAATGATACCGAAGAACTTGTATCAAATGTTGCCAATGAATTAATTCTCATGcaaagtaataataatgaactagaaacaacaacaacaccactaATGTTAGCTGAAATACAAGGTACTGATTTTACTCTTGCACGTGATTTTTTAGTAATGCATGATGAACAATTAAATGTCATGTCTTCATTGAGAAATCACaacaatgaaataacaaatgatgatACACTTGTTGtacatgaaaaaacaaatttaattgaacaaaatatcattaatattaatgatattcaattaaaaattgatgacgATAATTTATCTTTGTCTAAAAACCAAACTGAtggagataataaaaatacaaaaataaaattgaagcatcaaattaatgataaaaaaacatttcGATGTGATGATTGTGATGCAGTTTGTCTTAAAATTGGTGAGTGTAGCTGTCAGCATAATGTTTGCACAATTGCTGATCAACCAGTACCATCACGCGCAATAGCAACACTACCTGGttcttatttatcaataacaaaaattcaaacagGTAATGTAtgtgataatataatttatggaGTATTTGCAAAACGTAATATACGTCGTCGTACACAATTTGGTCCAATTGAGGGTATTGTATGTACATATGATGGTAaaccatttttaaattgtttaccATTACTTTATGAAACAAATGTTTATggggaatttttaaaaattgatgtatcaaatgaaaattcatcaaattggATGCGTTTTGTACGTCCAGCAATTGTTTATaaagaacaaaatttaataatatgccAACAAAATGatggtattgtttttttaacaactaaaaatatattaccaaaCGAAGAATTGAAAGCGGGTCCTAGTTTTGAGTATGCATTACGTAGAAATCTTAAAATACTTAAACctgatattaatgaaaatgcaatgatttatgataaaaatattgatttacaaTGTTTTGattgtaatgaatattttaataattcagaaatattaaaaaatcatttattaaatcatgataataataataataatgagaataatgataataatggtgaaacaagtaaaattaaaaaaacaaatacaaataaattatttaaaattattgatggaCAAACAACACAACATGTTTATACATGTCCACATTGtcgaaaaatatttccacGTAGTTATAGCTTAAAACGTCACAtgataatacataaaaatttaaaaaataatagctatCAATGTAATGAATGTAATgaagtatttataaattcacaaaaattattacgacatataaaaatattgcacgataataataaagaaaaagaaaattcacgtaaattaaataatgaatgcaaaatatgtaaattattatttgataaattgccattattaaatttacacatgataattcatgataaaaataatattgataataaaaatgaacaattatATTGTCCAGAATGTAATATTgagtttaattatcaaaatgatttaataaaacatattacaaaattacatggtaaaaaaaaaaaacaatcaaaatcacaaaaaacaaaaacaaataataataataataatatattatcatcacaCAAATGTACAATGTGTTATAAACGTTTCGCTACAAAAGTACGTTTACAACAACATTATCTTGTACATGGTTCAGATGATAAAAAACCATTACCatgtaatatttgtttaaaaagatTTATGAATAACTCAGCATTATCATGCCATTTAAAAACTCATTGTGaagataaacaaatatttgaatGTCCAATGTgtcgtaaattatttaatcaaatattacaattaaaagaTCATATTGAAACACAtcgtaatgatgataatacatttaattgtCCATATTGTTTacgtcaaaaatttttaaaatactcagTTATACGTAAGCATATACTTGCTTATCATTGTGAAAGAAAACACAAGTGTCAATATTGTAGTAAAACATTTccaacaattgataaattacgaATGCATTTATTACGTCATTCTGATTATCgtgaatttaaatgtaatgaaTGTTATTCACAATTTAAAcgtaaagataaattaaaagaacacATGACAAGAATGCATAATTCACAAAGAATTATAAAAAGggaacaacaacagcagcaacaatgTACACAGggtaataatgttaataataatattaatattagtaacaataataataatgataatgataatagcaacaacagcaacagtaatgttaaaaaattcattccaaAAGTAAATCCAACAGATTATAatcgttttatatataaatgtcatACTTGTTTAGTTGGTTTTAAAAGACGTGGTATGTTAGTTAATCATTTGGCTAAAAGACATCCAGATGTATTACCTGAATCAATACCAGAACTAAATTTACCAATATTACGTCAAACACgtgattattattgtcaatattgTGATAAAGTATATAAAAGTTCAAGTAAAAGAAAAGCTCATATTATGAAAAACCATCCTGGTCAAACATTACCACCGAGTAATAgacaaaaagataataataatacaagtgGTTTAGAGAATTTTACATATTGTCAAACAGTCGgatcaataacaacaataccaCATAATTGTCAATGGTGTCATAAACAGTATGCAAGTAAAgcaaaattattacaacatcaacgtaaaaaacattcaaatttAATGGAACCAGCTGATAAAATACCACGTCAACGTAATCGTCCATCTGACAGTCAAAATCAACcaccaattaaaaatattaataatgataatgatgatgatgaagatgatgataatgataatgataattttataaaaacaaagattatcaaaattgatgatgttgatgatattgttgataataatattgatattattggtGGACAGTTGGTTAGAATGAGAGATATACGTtga
Protein Sequence: MDDRGPHNEGAPIDPLDPLDISMMDKTSELSECWNSTNSLGTLSEHHQIKTNNNNNRLLYLTVEYVEEQSRDYSRMFPTYEQVIYSPRPNSPLLDFEHRVSPLDPNMSSTARYSPTPVQLPQIQYQNSVAVLQDQTSPIIVHDNTRADINFINQQNSTQTTQSNVNDVEDYHVDNTNDTEELVSNVANELILMQSNNNELETTTTPLMLAEIQGTDFTLARDFLVMHDEQLNVMSSLRNHNNEITNDDTLVVHEKTNLIEQNIININDIQLKIDDDNLSLSKNQTDGDNKNTKIKLKHQINDKKTFRCDDCDAVCLKIGECSCQHNVCTIADQPVPSRAIATLPGSYLSITKIQTGNVCDNIIYGVFAKRNIRRRTQFGPIEGIVCTYDGKPFLNCLPLLYETNVYGEFLKIDVSNENSSNWMRFVRPAIVYKEQNLIICQQNDGIVFLTTKNILPNEELKAGPSFEYALRRNLKILKPDINENAMIYDKNIDLQCFDCNEYFNNSEILKNHLLNHDNNNNNENNDNNGETSKIKKTNTNKLFKIIDGQTTQHVYTCPHCRKIFPRSYSLKRHMIIHKNLKNNSYQCNECNEVFINSQKLLRHIKILHDNNKEKENSRKLNNECKICKLLFDKLPLLNLHMIIHDKNNIDNKNEQLYCPECNIEFNYQNDLIKHITKLHGKKKKQSKSQKTKTNNNNNNILSSHKCTMCYKRFATKVRLQQHYLVHGSDDKKPLPCNICLKRFMNNSALSCHLKTHCEDKQIFECPMCRKLFNQILQLKDHIETHRNDDNTFNCPYCLRQKFLKYSVIRKHILAYHCERKHKCQYCSKTFPTIDKLRMHLLRHSDYREFKCNECYSQFKRKDKLKEHMTRMHNSQRIIKREQQQQQQCTQGNNVNNNINISNNNNNDNDNSNNSNSNVKKFIPKVNPTDYNRFIYKCHTCLVGFKRRGMLVNHLAKRHPDVLPESIPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGQTLPPSNRQKDNNNTSGLENFTYCQTVGSITTIPHNCQWCHKQYASKAKLLQHQRKKHSNLMEPADKIPRQRNRPSDSQNQPPIKNINNDNDDDEDDDNDNDNFIKTKIIKIDDVDDIVDNNIDIIGGQLVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00132176;
90% Identity: iTF_00132779;
80% Identity: -