Acol005847.1
Basic Information
- Insect
- Aphidius colemani
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_030523065.1
- Location
- JAPYYR010001262.1:12963-15039[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-114 3e-110 368.1 33.3 1 300 29 325 29 325 0.97 2 3 0.0045 74 2.4 3.0 122 171 325 374 323 377 0.92 3 3 0.056 9.2e+02 -1.2 5.9 195 238 357 399 346 400 0.58
Sequence Information
- Coding Sequence
- atggagTCAACAGTAGCAGGAAGAAGACGTAATGCAACAAGACATTCTGCTGAAGATCAGGCTCTTGATCAAATAGCCAAGGAGgcAGAAGCAAGACTCGCTGCAAAAAGACAAGCCCGAGCTGAAGCTCGAGAAATCCGAATGAGGGATTTAGAAAGACAACATAAAGAATCTGAAGAAAATGCTGATAGGGTTTACGATATGTGtacatctGATGGACCAAGAACACTTAGGGTAACACCAGATCCAATAAGAACAGCTCGGCTATtgacaaattcaaataattttcaatcaagTCGTAGATCATCAGAAGATTCACTTGAAGATGCTGGTTTAAGCAGAGATTTACgattagaattaaaagaatttgaagaaaaatttcgTAAAGCAATGATTGCTAATGCCCaacttgataatgaaaaatcatcatatGCATATcaagttgatttattaaaagataaattagaAGAATTAGAAGAATCATCAGCAACACTAAGACGTGAACTCagggaaaaaaatagagaagcTGATCAATTAAAACGTGTCAGTCAAAGATTGAAAGATGATTTAGATCTATGCAAAGCACAATTATTAGAACGAGATACTCTTATTCAAgaaAATGGACTTGTTATTGTGGAAGATGAAGAAAGTGAAAATGAAGAAACTGGTCAAATGAATGGAACTCATAAAAAGAGAGTACTAGTCAGTACAGAAGCTGctgaattattacaaaatgcTGGTGAAGGTTCATTAGatgTTCGGTTAAGAAAATttgcttttgaaaaaaaagaacttcaAGATGAAATAGgacatttaaaattagaaCTTGATGAAGCTAAAAATCGAATGAGATCTGAAAGATCATCAGGTTCAGTATTAGGTCTAgcagataatgatgatattcaaCGTGAAGCTAATAAATTACTTgctgattataaatttaaattacaaaaagctGAACAAGATATGTTGACATTACAAGCAACAGTTGCAAGGCTAGAAAGTCAAGTAATACGTTATAAAACATCAGCTGAAGCATCTGAAAAAGCTGAAGATGAACTTAAAGTTGAAAAACGTAAATTACAACGTGAAgtCAGAGAATCACAAGGTCGTGTTGAGGAACTTGAAACTGCAAATTCACATCTACAAAAACGCCttgataaactaaaaaatgcaaaatcaGCATTATTAAAAGAACTATGA
- Protein Sequence
- MESTVAGRRRNATRHSAEDQALDQIAKEAEARLAAKRQARAEAREIRMRDLERQHKESEENADRVYDMCTSDGPRTLRVTPDPIRTARLLTNSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEESSATLRRELREKNREADQLKRVSQRLKDDLDLCKAQLLERDTLIQENGLVIVEDEESENEETGQMNGTHKKRVLVSTEAAELLQNAGEGSLDVRLRKFAFEKKELQDEIGHLKLELDEAKNRMRSERSSGSVLGLADNDDIQREANKLLADYKFKLQKAEQDMLTLQATVARLESQVIRYKTSAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00687172;
- 80% Identity
- -