Aobl017654.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- -
- Assembly
- GCA_963966015.1
- Location
- OZ014433.1:11582283-11587593[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0013 0.14 13.2 0.2 1 23 257 281 257 281 0.90 2 14 1.6 1.7e+02 3.5 5.1 3 19 286 302 285 304 0.96 3 14 0.0069 0.72 10.9 4.6 1 23 314 336 314 336 0.98 4 14 0.097 10 7.3 0.2 3 21 354 372 354 373 0.95 5 14 0.084 8.8 7.5 0.8 2 23 380 401 379 401 0.96 6 14 0.0003 0.032 15.2 0.3 3 23 409 429 407 429 0.98 7 14 0.0013 0.13 13.3 0.1 1 23 436 458 436 458 0.97 8 14 1.3e-05 0.0014 19.5 3.5 1 23 467 490 467 490 0.95 9 14 0.011 1.1 10.3 1.1 1 23 503 526 503 526 0.96 10 14 9.6e-06 0.001 19.9 0.7 1 23 533 555 533 555 0.98 11 14 1.5e-06 0.00016 22.4 0.3 1 23 561 583 561 583 0.97 12 14 8.4e-06 0.00089 20.1 5.9 1 23 589 612 589 612 0.97 13 14 1.1e-06 0.00011 22.9 1.4 1 23 618 640 618 640 0.99 14 14 4e-05 0.0042 18.0 1.0 1 23 647 669 647 669 0.98
Sequence Information
- Coding Sequence
- ATGAATTCGCCCGAAATTGTTCAAGACTTTACGAATATATGTCGATGTTGCATGGAGGTTGCTTCTTATGACCTTTTCAAAACTTATTTTGAGAACGAACCTTTAGCAAAACTTTTATCCGTATGCACTAGTCAAAGAATTTCGAAGCATGACATATTTCCCAAAAATATATGTCAGGCTTGCTTACAAAGCTTGATAGCAGCTTATATCTTCAAGGAGAAGGTAGTGAAGACGCAGCAGGCCCTTGCATCAATAGCTAGAGTTGTTGATAgagcaaaaacaaaaaaaaatggtaatGTTTCCAAAGACCACACCTACCACCACCTCGACAAGAAGCAAATTACTCCTCAGCAGCTCGGTGAACATATAGAACAACAATTGCCAGCAATGGGTCATATAAAGGTGGAAATTGAAAACCAGGATGATGAATATCAGATTATGCATAATCAGATGCAAAATTCAGGTATGGAAGTCAAATATATCAAGCAGAATGGAGATGGTGAAGAACAAGAATATTGGCTGCAAGAAGTTCCAGATAGTGAAGGAGATACTCTAGACCCGACACAATCAGTACAAAGCTATGAGGATATGAATAATATTCTGCATTCAGTGAAAGTTCTGAATCCTGTTCATTATGCTGGTGGTGCCACCTATGTCGAAGGAGATGGCCAAGAAGGGGAAGGAGAAGAATACCAAACCATAGAGTTCATCGACGGGGATGTGAATTATGTTGATGGATTAATCGAACACAAGCAGAGAGAGAAAATCCATATTTGCCGTGTTTGTAATGAGGGTTTTGCCACTGCCAGAGAGCTTAATGCCCACGCTCAAACAACTGATCATCCACAAAGATGCTGCACAACTTGCTTCGAGTCCTTTCACAGTTACTCAGCTTTGATTAAACATTGTATGGATACTAAACATGCTCGTCCACCAATGTTTAAATGTCCATATTGTTTCAAGAAATGTGACAACaaacaaattttgcaaaatcacataaaaaatcataTGAAGACCAGAAATATCAAGGTTACCAAGGACAAGAAAGGGAACCTTGGATGTCAGGTGTGTCGTACATCTTTCGTCACCGTTTTGGATCTGAGACAACATTATAAGGATAACAAAGAGAGTCACTTGACATGTCATATTTGTCTTGAAAAATACGAGGATTTAGAAACTTTTGATGTACATCTAAAGCAACATGAAGTGGATAAGCCTTTCGGGTGTGATATATGCGGTGCCAGGTACAACTTGCAGGCTAATTTTGAGCGCCATCTTAAGAAACATACTCAAAATGATACTCTTTATAAATGCCAGTTTTGTCCAAAAGTTTTTGGTGATGAAGCTTCAGTGGAAGAACATGAGAAGCTCCATGGAGTAGTTGAGACGACCAGGACTCACCATTGCAATGAATGTGGTAAAGTTTTCACTACTGCTGGGTTCTTGAAGAAGCATGTGGAGCGTTTTCATCTAGGACTAAACTTCAACAAGAATCAGCGTGTTCCTTTCGAATGCGAGCTGTGCGGAAAAGTCTTGTCATGCAAAGCCACTCTTTACAGTCATTTGAAGAATGTTCATgacaaaaatcaaaaatcatTCACTTGTGAAATTTGTGGTAAGGTTCTGAAAACCAAAACATCATTGGAATTGCACACCAACTATCACAATGGAAATTGTCCTTTCAAGTGTGGAATTTGCGGAAAAGCATTTACCAATGCGACGACCCTGAAGAGTCATTCTTTGATACACACTAACGAAAGGCCCCATGAATGTCAGGTGTGTCACAAAACTTTCAAGCAAAAGCCTCACCTCACCACTCATATACTGACCATTCATACAGCCCTTAAATTGTTCAAATGCGATTATTGTGAGAAAACATTCGCGCTCAAAGGTAATCTCTCGCAACACTTGAAGACGCATACTGGATGTGAATCGCCCTTCGTATGTTCTGTTTGTAATAAAGCGTTTTATTTCGCAAGCAGATTGaggaaacatgaaaaaattcatatgaaACAGTAG
- Protein Sequence
- MNSPEIVQDFTNICRCCMEVASYDLFKTYFENEPLAKLLSVCTSQRISKHDIFPKNICQACLQSLIAAYIFKEKVVKTQQALASIARVVDRAKTKKNGNVSKDHTYHHLDKKQITPQQLGEHIEQQLPAMGHIKVEIENQDDEYQIMHNQMQNSGMEVKYIKQNGDGEEQEYWLQEVPDSEGDTLDPTQSVQSYEDMNNILHSVKVLNPVHYAGGATYVEGDGQEGEGEEYQTIEFIDGDVNYVDGLIEHKQREKIHICRVCNEGFATARELNAHAQTTDHPQRCCTTCFESFHSYSALIKHCMDTKHARPPMFKCPYCFKKCDNKQILQNHIKNHMKTRNIKVTKDKKGNLGCQVCRTSFVTVLDLRQHYKDNKESHLTCHICLEKYEDLETFDVHLKQHEVDKPFGCDICGARYNLQANFERHLKKHTQNDTLYKCQFCPKVFGDEASVEEHEKLHGVVETTRTHHCNECGKVFTTAGFLKKHVERFHLGLNFNKNQRVPFECELCGKVLSCKATLYSHLKNVHDKNQKSFTCEICGKVLKTKTSLELHTNYHNGNCPFKCGICGKAFTNATTLKSHSLIHTNERPHECQVCHKTFKQKPHLTTHILTIHTALKLFKCDYCEKTFALKGNLSQHLKTHTGCESPFVCSVCNKAFYFASRLRKHEKIHMKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00349442; iTF_00020704;
- 90% Identity
- -
- 80% Identity
- -