Csep022469.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015577.1:23165906-23171544[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0033 0.56 12.0 1.7 1 23 262 286 262 286 0.91 2 14 2.3 3.9e+02 3.0 3.2 2 19 289 307 288 309 0.94 3 14 0.0069 1.2 11.0 4.4 1 23 319 341 319 341 0.98 4 14 0.019 3.1 9.6 0.1 3 21 359 377 359 378 0.96 5 14 0.018 3.1 9.6 2.6 2 23 385 406 384 406 0.96 6 14 8.5e-05 0.014 17.0 0.6 3 23 414 434 412 434 0.98 7 14 0.00036 0.061 15.0 0.2 1 23 441 463 441 463 0.97 8 14 0.00038 0.064 14.9 3.9 1 23 472 495 472 495 0.95 9 14 0.003 0.51 12.1 1.1 1 23 508 531 508 531 0.97 10 14 2.9e-05 0.0048 18.5 0.7 1 23 538 560 538 560 0.98 11 14 1.6e-06 0.00027 22.4 0.3 1 23 566 588 566 588 0.97 12 14 8.8e-06 0.0015 20.1 5.9 1 23 594 617 594 617 0.97 13 14 1.1e-06 0.00019 22.9 1.4 1 23 623 645 623 645 0.99 14 14 4.1e-05 0.007 18.0 1.0 1 23 652 674 652 674 0.98
Sequence Information
- Coding Sequence
- ATGAATTCAACAGAAATTGCTCAAGATTTCACGAATATATGCCGATGCTGCATGGAAGTTGCTTCTTATGACCTTTTCAAAACTTATTTTGAGAACGAGCCTTTAGCGAAACTCTTATCAGTATGCACAAATCAAAGAATTTCCAAAAACGACATTTTCCCAAAGAATATATGTCAAACTTGCTTGCAAAGTTTGATAGCAGCATATATTTTCAAAGAAAAGGTTATAAAAACCCAGCAAGCACTCCTTTCAATTGCAAGAGTGGTTGATAGAGTGAAAACCAAAAAAAATGGCAATGTTTCCAAAGACCACACTTACCACCATGATAAGCAGCAACTTGCGTCTACTCAGCAGCTTAGTGGACATACAGAACAACATATGCCAACCATGAGTCATGTCAAAGTGGAAATTGAAAACCAGGATGATGATTATCTCTTACATGAACAAATGCAGTTGGAAAATGCTGGAATGGAAGTTAAATATATTAAACAGAATGGCGATGGTGAAGAACAGGAATTTTGGTTGCAGGAAGTGCCTGAAGGCGAAGGAAGCAATCAGTTTTTTGCAATAGATCCTTCTCAGTCTGAACAATATGAGGATATGAACAACATCTTACACAATGTGAAAGTTCTGAATCCGGTTCATTTTGCCGATGGTAATACCTATGTCGAAGGAGATGCTCAGGAAGGAGAACATGAAGGATACCAGACGATAGAATTTATCGATGAAGATGTGAATTATGTCGATGAATCTTCCGTTGAGACCAAGCAAAAAGAAAAAATCCACGTCTGTCGTGTTTGTCACGAGGGTTTTTTCACGTCCAGAGAGTTGAATAATCATGCTCAAACACTTGGACACGCTCAGAGATGTTGCATTATTTGCTACCAAGCTTTTCACAGTTATTCGTCTTTGATCAAGCATTGTATGGACACTGGACATACTCGCCCCACGATGTACAAATGTCCGTATTGCTTCAAGAAATGTGACAATAAACAAATTTTGCAAAGTCATATCAAAAACCACATGAAGACTAAAATTATCAAGGTTACCAAGGATAAGAAGGGCAACTTGGGATGTCAGGTGTGCCGAACAGCTTTTATTTCTGTTTCTGATCTGAGACAACACTACAAAGATAATAAAGAGAGCCATTTAACCTGTCATGTGTGCCTTGAGAAATTCAATAATTTAACAAAACTTGATACACATCTCAAAAATCACGACATTGAAAAACCATTTGGATGTGAAATTTGCGGTGCCAGATTCAACTTCCAAATCAATTTTGAGCGTCACCTTAAAAAGCATACCCAAAGCGAGACATTGTATAAATGCCAGTTTTGTCCAAAAGTTTTTTCCGATGAACCCTCAGTAGAAGAACATGAGAAACTTCACGAAGTAGTTGAGGACAACAGAAGTCATCACTGCACAGAGTGTGGGAAATTATTCACCACCGCAGGATTTTTGAAGAAGCATGTAGAACGTTTTCACCTTGGGTTGAACTTCAACAAGACCCAGCGTGTACCTTTCGAATGTGAACTGTGCGGAAAGGTTTTATCTTGTAAAGCCACTCTCTACAGTCATATGAAGAATGTTCATGAGAAAAGTCAAAAATCGTTCACCTGTGAAATTTGTGGAAAGATTCTGAAGACTAAAACGTCTTTAGAACTACATACGAATTATCATAATGGAAATTGTCCTTTCAAATGCGGAATTTGCGGTAAAGCCTTCACCAATGCAACAACTTTGAAGAGTCATTCATTGATACACACCAATGAAAGACCTCACGAGTGCCAGGTCTGCCACAAGACTTTCAAGCAGAAACCACACCTTACAACCCACATACTCACCATTCATACAGCACTAAAGCTATTCAAATGCGACTATTGTGAGAAAACGTTTGCACTCAAAGGAAATCTTTCCCAGCATTTAAAGACGCATACCGGGTGCGAGTCTCCATTTGTTTGCTCTGTTTGCAATAAAGCCTTTTATTTCGCAAGCAGGCTAAGGAAACACGAAAAGATTCATATGAAGCAGTGA
- Protein Sequence
- MNSTEIAQDFTNICRCCMEVASYDLFKTYFENEPLAKLLSVCTNQRISKNDIFPKNICQTCLQSLIAAYIFKEKVIKTQQALLSIARVVDRVKTKKNGNVSKDHTYHHDKQQLASTQQLSGHTEQHMPTMSHVKVEIENQDDDYLLHEQMQLENAGMEVKYIKQNGDGEEQEFWLQEVPEGEGSNQFFAIDPSQSEQYEDMNNILHNVKVLNPVHFADGNTYVEGDAQEGEHEGYQTIEFIDEDVNYVDESSVETKQKEKIHVCRVCHEGFFTSRELNNHAQTLGHAQRCCIICYQAFHSYSSLIKHCMDTGHTRPTMYKCPYCFKKCDNKQILQSHIKNHMKTKIIKVTKDKKGNLGCQVCRTAFISVSDLRQHYKDNKESHLTCHVCLEKFNNLTKLDTHLKNHDIEKPFGCEICGARFNFQINFERHLKKHTQSETLYKCQFCPKVFSDEPSVEEHEKLHEVVEDNRSHHCTECGKLFTTAGFLKKHVERFHLGLNFNKTQRVPFECELCGKVLSCKATLYSHMKNVHEKSQKSFTCEICGKILKTKTSLELHTNYHNGNCPFKCGICGKAFTNATTLKSHSLIHTNERPHECQVCHKTFKQKPHLTTHILTIHTALKLFKCDYCEKTFALKGNLSQHLKTHTGCESPFVCSVCNKAFYFASRLRKHEKIHMKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00130741;
- 90% Identity
- -
- 80% Identity
- -