Aobl010582.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- -
- Assembly
- GCA_963966015.1
- Location
- OZ014430.1:15580092-15589307[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0013 0.14 13.2 2.2 2 23 147 168 146 168 0.95 2 16 4e-06 0.00042 21.1 4.9 1 23 173 195 173 195 0.98 3 16 0.00026 0.027 15.4 4.9 1 23 201 223 201 223 0.97 4 16 0.00033 0.035 15.1 1.0 1 20 229 248 229 250 0.94 5 16 3.5e-05 0.0036 18.2 0.4 1 23 257 279 257 279 0.95 6 16 0.052 5.5 8.2 0.1 1 23 503 526 503 526 0.87 7 16 2.6e-07 2.8e-05 24.8 3.8 1 23 532 554 532 554 0.98 8 16 2.2e-05 0.0023 18.8 7.3 1 23 560 582 560 582 0.97 9 16 0.0022 0.23 12.5 2.8 3 23 590 611 589 611 0.94 10 16 0.00082 0.086 13.8 0.7 1 23 623 645 623 645 0.94 11 16 5.3e-05 0.0056 17.6 3.5 1 23 651 673 651 673 0.97 12 16 1.7e-06 0.00017 22.3 0.5 1 23 680 702 680 702 0.96 13 16 1e-05 0.0011 19.8 1.3 1 23 708 730 708 730 0.98 14 16 3.1e-07 3.3e-05 24.6 0.9 3 23 738 758 736 758 0.96 15 16 1.5e-05 0.0016 19.3 0.1 1 23 764 786 764 786 0.99 16 16 0.043 4.5 8.4 0.7 1 23 791 814 791 814 0.97
Sequence Information
- Coding Sequence
- ATGGAACAAAAACCACAATACGATTTCGACCGTATTTGTCGAACTTGCAAGGGAGAATCAACTGTTGTGAGATCCGTTTTCGAAACCTACGAAAATGTAGACAGCACAACCCATATTCACGAGATGCTAATGGCTTGTGCGGCAGTCCAGGTTGGTTATGATGATGGATTGCCTTCTTTTATGTGTGAAAAATGTGTACAGAAACTACAAGCAGCATATTTCTTCAAGAAACAATGTGAAGCCAGTGATTCTTCTCTTAGAGAATATGCCAAAACGATGAAGGAAAATGATGTCAAACCATCGGTATCTTCTGAAGATGTGGATCAAAATAATTATATTGagaaattcatatttgaaaacagTGCCAAGTGCAAGGAAGCTGATCCTGAATCCAAAACAGACATTATTGAACTTCTAGATAATAATCAAATGATACTTACGTGTAGAGAATGTGGGAAAGTTTTCACAACCCTTGAAGGTCTCAGATGCCATAAAAGACTTCACACTGGAGCACTCTTCAAATGCAAATATTGTGATAAAGAATATACTCGTCAAAATCATCTACAAAGACATGAATTGTCTCACAATAGAAGAAAAGTACACGTATGTAGGATCTGCAGCAAAACTCTAACAAGGCTGGAACATTTGAAAAGACACTTAACCACTCATCTAAAAGAAAAACCATTTTCTTGTACAAGGTGCAAGAGAGGATTCAACAGATCTGAGCATTTAGAGAACCATGTGGCTAGATGTAAAGGAGATAGGATTCATATTTGTGACATATGCAATAAAGGATTCAATAGAGCGGACAGTTTAGAGGTTCATAAGCTGCTCCATGAAAACCAAAAGCCTGTCCTTCCTACCCTGGAAAATTTGGACAATATTGAAGATCACTATTTCGAAATTGATTACGACGATAATACTGCATTCTCGGATGATAACTCTAATGAAGTTGAGGAATGTTTCGAGCCACATGTTGAAGTCACTGAAAGTTTGGATGAAAAACTGAGTGAAGACATAACTATGGGGGAAGAACCAGAAAACATGATGAAGGAAGAAGTTTCTGATGAAATGAAGAGTGAGATGTTGGAAGGAATAAATGGAGAAGATTCAGTAATTCAGGATAACATATCTGAAGGAGATGGACCAGAAAATGACACTGATACTGGTGATTTGGAGCAAATTTTGAAGGAAGAAGGTCATGTAGATATTGATGACAGAGGTGATGAATCCGAAGAGGAAATGGACGATGATAAACCATCCATCCATGATGAAGTTATAGATCATGATGTTGGCACTCTAATGGGTTCCAAGGTTTCAATAGGAATTCTTCTTGTTCTAGATCTTGCGTCAGATAGTGGAGGGTCAGAATACACGCCACCCACAAAAACGAGAAAAAGAGGAAGACCAAGAAAATATCCTCCCAAACCTCAGAAAATGCCTAAATCATCTAAAAGCAAGAAATCTCCTAAAAAGATAAAGACAGAAGACGAAGAATATGGAGAGTACTCTTGTCCTGAGTGCCATGAGATATTTCCATTGATGACCGTTCTAGAGAAGCACGCTATAGAACTTCATCCAGGCGTTAAGGTGTATAAGTGCGAAGAGTGCCAAAAACGTTTCAGCCGCCCCAATCATCTAAAGCGCCATCTATTGTCACATTCCGAGGATAAACCACATGTCTGTGAAATATGCACTAAGTGTTTCAACCGCAAAGACCATCTCAATCAACACTTGAAGTTACACTTGAAGTCTTCAGATGAAATGTGTGATATTTGTTTCAAACCATTCCATCGAGCTGATCATCTCGCTAAACACAAAGCTTCGAAACATGGTGTCGGACAGAAGATGACAAGCGACAAGAAATACGAGTGTGATATCTGTCAAAAATCCTTCACAACAGAGAAATATAGAGATGTCCATGTGAAGGGTCACCAGGGTATTAAAAAGTATCCATGCAAGGTGTGTGATAAGACATTCTTGTCTAAATCCCATCTGAATGAACATCAGAAGTTCCACAATGAACATTGCAAGAAGTTTCTCTGTTCGGAATGTGGTCAGAGGTTTATAAGGAACGATTATTTGGTTATACATATGCGGAGACATAGGGGAGAAAAACCGTTCAAGTGTAAATTCTGTGGAAAAgGATTCCCAAGAACAACGGATTTGACTGTACATGAAAGGTATCACACAGGAGAGAAAACCCATCTTTGTACAATTTGTGGAAGAGGTTTTGGAAGGGCATATAATTTGACAGTGCATATGAGAACACATACAGGTGAAAAACCATATCAATGTACATACTGTGATGCTGCCTTTGCCCAAGGTAATGACTTAAAGGCGCATGTTCGACGACATACTGGAGAAAGGTTCCAATGTGAGTTATGCACAGAAAGCTTCCTTATGGGTTACTTACTCACACAACACAAGCGTACTATACACGGATTGAATGTGGTTAGTAATATCAGGCGTCTTCAACCCATCAACAAGTTGAACCCTGAAGATCCAAATGAACCTCCACCGATTACAATACCCCTGCCAAAACCTGTAATTCCTGACAATCTAATGAATAACTTACAGACGCCTATGGCTACCTTGACACCTTTAGGAGCATTGTCGTTTGCCCAATTACAGCATCATATGGTTCCAGAATGA
- Protein Sequence
- MEQKPQYDFDRICRTCKGESTVVRSVFETYENVDSTTHIHEMLMACAAVQVGYDDGLPSFMCEKCVQKLQAAYFFKKQCEASDSSLREYAKTMKENDVKPSVSSEDVDQNNYIEKFIFENSAKCKEADPESKTDIIELLDNNQMILTCRECGKVFTTLEGLRCHKRLHTGALFKCKYCDKEYTRQNHLQRHELSHNRRKVHVCRICSKTLTRLEHLKRHLTTHLKEKPFSCTRCKRGFNRSEHLENHVARCKGDRIHICDICNKGFNRADSLEVHKLLHENQKPVLPTLENLDNIEDHYFEIDYDDNTAFSDDNSNEVEECFEPHVEVTESLDEKLSEDITMGEEPENMMKEEVSDEMKSEMLEGINGEDSVIQDNISEGDGPENDTDTGDLEQILKEEGHVDIDDRGDESEEEMDDDKPSIHDEVIDHDVGTLMGSKVSIGILLVLDLASDSGGSEYTPPTKTRKRGRPRKYPPKPQKMPKSSKSKKSPKKIKTEDEEYGEYSCPECHEIFPLMTVLEKHAIELHPGVKVYKCEECQKRFSRPNHLKRHLLSHSEDKPHVCEICTKCFNRKDHLNQHLKLHLKSSDEMCDICFKPFHRADHLAKHKASKHGVGQKMTSDKKYECDICQKSFTTEKYRDVHVKGHQGIKKYPCKVCDKTFLSKSHLNEHQKFHNEHCKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTIHGLNVVSNIRRLQPINKLNPEDPNEPPPITIPLPKPVIPDNLMNNLQTPMATLTPLGALSFAQLQHHMVPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00020685; iTF_00349424; iTF_00764916; iTF_00965366;
- 90% Identity
- -
- 80% Identity
- -