Mdil007137.1
Basic Information
- Insect
- Megalocaria dilatata
- Gene Symbol
- -
- Assembly
- GCA_034642435.1
- Location
- CM067855.1:36582970-36594779[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0019 0.22 13.2 2.2 2 23 147 168 146 168 0.95 2 16 5.9e-06 0.00066 21.1 4.9 1 23 173 195 173 195 0.98 3 16 0.00038 0.042 15.5 4.9 1 23 201 223 201 223 0.97 4 16 0.00048 0.054 15.1 1.0 1 20 229 248 229 250 0.94 5 16 5.1e-05 0.0057 18.2 0.4 1 23 257 279 257 279 0.95 6 16 0.025 2.8 9.7 0.0 1 23 487 510 487 510 0.91 7 16 3.2e-06 0.00036 22.0 4.3 1 23 516 538 516 538 0.98 8 16 2.6e-06 0.00029 22.3 5.0 1 23 544 566 544 566 0.96 9 16 0.0035 0.39 12.4 1.9 2 23 573 595 573 595 0.94 10 16 0.0012 0.13 13.9 0.7 1 23 607 629 607 629 0.94 11 16 7.7e-05 0.0087 17.6 3.5 1 23 635 657 635 657 0.97 12 16 2.4e-06 0.00027 22.3 0.5 1 23 664 686 664 686 0.96 13 16 3.1e-06 0.00035 22.0 1.2 1 23 692 714 692 714 0.98 14 16 4.6e-07 5.2e-05 24.6 0.9 3 23 722 742 720 742 0.96 15 16 2.2e-05 0.0025 19.3 0.1 1 23 748 770 748 770 0.99 16 16 0.063 7 8.5 0.7 1 23 775 798 775 798 0.97
Sequence Information
- Coding Sequence
- ATGGAACAACAAACACATTACGATTTCGATCGTATCTGTCGAACTTGCAAGGGCGAATCCACTGTTGTGAGATCTGTTTTCGAAACCTTCGAAAATGTAGACAGCACAACCCATATTCACGAGATGCTAATGGCTTGTGCGGCAGTCCAGgTTGGATATGAAGATGGATTACCCTCTTTTATGTGTGAGAAATGCGTGCAAAAATTGCAAGcggcatatttctttaagaagcAGTGTGAAGCTAGTGATACTTCTCTTAGAGAATATGCCAAAACGATGAAGGAAAATGATGTGAAACCCTCAGTATCACCTGGAGAAGTGGATCAGAATAGTTATATTGaaaaatttatttatgaaaatagtGCAAAGTCAAAGGAAACTGAAACTGAACCTAGAACGGACTTCATTGAACTTTTGGAAAATAATCAGATGGTACTTACATGTAGGGAATGTGGAAAAGTTTTCACAACACTGGAAGGTCTAAGATGTCATAAAAGACTCCACACGGGTGCTCTTTTCAAATGCAAATATTGCGATAAAGAATATACACGTCAGAATCACCTTCAGAGGCATGAACTTTCCCATAATAGAAGAAAAGTACATGTTTGTAGAATTTGTAGTAAAACGCTTACCAGACTAGAACATTTAAAAAGACATCTAACTAcacatttgaaagaaaaaccaTTCTCTTGTACGAGATGCAAGAGGGGATTTAATAGGTCTGAACATTTGGAGAATCATGTGGCTAGATGTAAAGGTGATAGGATCCATATATGTGACATATGCAATAAAGGTTTTAATAGGGCCGATAGTTTGGAGGTTCATAAATTACTTCATGAAAATCAAAAGCCTGTCCTCCCAACTTTGGAAAATTTAGACAATATTGAagatcattattttgaaatcgATTATGATGATAATACTGCATTCTCCGACGATAATTCAAATGaagttgaagaatgttttgaaccacATATTGAAGTCATGGAGACCACAGATGAAAAAATAAGtgaagaaattattgaagagGATGATAAACCCAAAGAAGAAATTTCCGAAGAGATGAAGACTGAAGAATTATTAGAGGGAACAAGCAGGGATGATACATTGGATAATGATAATGTTATATCTGATGGTGATGTAAGAGAAAATGATAATGATGATTTAGAACAAATTTTGAAGGAAGAAAGTCAAGGGGATAGTGAAGACAGAGATAATGAAATCGAAGAAGACTTTGATGATGATAAACCAATCACGAACGAGGATATTATTGATGATGTTGTCGATCGTGATGATCCAGCTTCTGATAGTGGTGGTTCAGAATATACACCAccaacaaaaacaagaaaaaggGGAAGACCTAGAAAATATCCTCCAAAACCACCCAAAGCTCAAAAATCTCCCAAGGGCAAGAAATCACCTAAAAAGATCAAAAAAGAGGAGGAAGAATATGGAGAATATCCTTGTCCTGAATGCCAGGAAATATTTCCTCTTATGACTCTCTTAGAAAAGCACGCTTCAGAACTTCATCCAGGAGTCAAGGTATATAAATGTGAACAATGTACAAAAGGTTTCAGTCGGTCCAACCATCTGAAGCGCCATCTATTATCCCATTCTGAAGACAAACCACATATCTGCGAAATATGCACTAAGAGTTTCAATCGCAAGGATCATCTTACTCAGCACATGAAGTTGCATATGAAGGCTTCGGATGAAGTTTGTGATATATGTCTAAAACCATTCCATAGAGCTGATCACCTTGCTAAACACAAGGCTTCTAAACATGGTGTTGGACAGAAGGTAACAAGTGAGAAAAAATATGAATGTGATATCTGTCAGAAATCTTTTACGACAGAGAAATATAGGGATGTCCATGTAAAGGGCCACCAGGGCATTAAAAAGTATCCATGCAAAGTTTGTGATAAGACCTTCTTGTCTAAATCTCACCTAAATGAACACCAGAAGTTTCATAATGAACATTGCAAGAAGTTCCTCTGTTCGGAATGTGGTCAGAGATTTATAagaaatgattatttggttataCATATGCGAAGACATAGGGGAGAAAAACCATTCAAGTGTAAATATTGTGGAAAAGGATTTCCAAGAACGACAGACTTAACAGTACATGAAAGGTATCACACAGGGGAAAAAACTCATCTTTGCACTATTTGTGGTAGAGGTTTCGGAAgagctTATAATTTAACAGTTCATATGAGAACGCATACAGGTGAGAAACCATATCAGTGTACATATTGTGATGCTGCTTTTGCACAAGGAAATGATTTGAAAGCACATGTGCGAAGGCATACTGGGGAAAGATTCCAGTGCGAGTTGTGCACAGAAAGTTTCCTGATGGGTTACTTACTTACACAACATAAGCGTACAGTGCATGGACTAAATGTGGTTAGTAATATCAGGCGGCTTCAGCCCATCTCAAAGTTAAATCCTGAGGATCCTAATGAACCTCCACCAATTACGATACCTCTGCCAAAACCAGTAATTcctgaaaatttattaaataacatACAGGCACCCATGGCAACCTTGACACCCTTAGGAGCACTGTCTTTTGCCCAGTTACAGCATCATATGGCCCCAGAGTGA
- Protein Sequence
- MEQQTHYDFDRICRTCKGESTVVRSVFETFENVDSTTHIHEMLMACAAVQVGYEDGLPSFMCEKCVQKLQAAYFFKKQCEASDTSLREYAKTMKENDVKPSVSPGEVDQNSYIEKFIYENSAKSKETETEPRTDFIELLENNQMVLTCRECGKVFTTLEGLRCHKRLHTGALFKCKYCDKEYTRQNHLQRHELSHNRRKVHVCRICSKTLTRLEHLKRHLTTHLKEKPFSCTRCKRGFNRSEHLENHVARCKGDRIHICDICNKGFNRADSLEVHKLLHENQKPVLPTLENLDNIEDHYFEIDYDDNTAFSDDNSNEVEECFEPHIEVMETTDEKISEEIIEEDDKPKEEISEEMKTEELLEGTSRDDTLDNDNVISDGDVRENDNDDLEQILKEESQGDSEDRDNEIEEDFDDDKPITNEDIIDDVVDRDDPASDSGGSEYTPPTKTRKRGRPRKYPPKPPKAQKSPKGKKSPKKIKKEEEEYGEYPCPECQEIFPLMTLLEKHASELHPGVKVYKCEQCTKGFSRSNHLKRHLLSHSEDKPHICEICTKSFNRKDHLTQHMKLHMKASDEVCDICLKPFHRADHLAKHKASKHGVGQKVTSEKKYECDICQKSFTTEKYRDVHVKGHQGIKKYPCKVCDKTFLSKSHLNEHQKFHNEHCKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPISKLNPEDPNEPPPITIPLPKPVIPENLLNNIQAPMATLTPLGALSFAQLQHHMAPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00130725;
- 90% Identity
- -
- 80% Identity
- -