Csep033182.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015576.1:24424885-24437028[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0013 0.22 13.2 2.2 2 23 148 169 147 169 0.95 2 16 2.9e-06 0.0005 21.6 5.1 1 23 174 196 174 196 0.98 3 16 0.00026 0.044 15.5 4.9 1 23 202 224 202 224 0.97 4 16 0.00033 0.056 15.1 1.0 1 20 230 249 230 251 0.94 5 16 3.4e-05 0.0058 18.2 0.4 1 23 258 280 258 280 0.95 6 16 0.04 6.7 8.6 0.1 1 22 483 504 483 506 0.90 7 16 1e-07 1.7e-05 26.2 3.4 1 23 512 534 512 534 0.98 8 16 2.2e-05 0.0037 18.8 7.3 1 23 540 562 540 562 0.97 9 16 0.00073 0.12 14.0 2.2 3 23 570 591 569 591 0.94 10 16 0.003 0.5 12.1 0.7 1 23 603 625 603 625 0.93 11 16 5.4e-05 0.009 17.6 3.5 1 23 631 653 631 653 0.97 12 16 1.7e-06 0.00028 22.4 0.5 1 23 660 682 660 682 0.96 13 16 2.1e-06 0.00036 22.0 1.2 1 23 688 710 688 710 0.98 14 16 3.2e-07 5.4e-05 24.6 0.9 3 23 718 738 716 738 0.96 15 16 5.5e-05 0.0093 17.6 0.1 1 23 744 766 744 766 0.99 16 16 0.043 7.3 8.5 0.7 1 23 771 794 771 794 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAAAAACCAAAGTACGATTTCGATCGCATTTGTCGGACCTGCAAGTGCGAATCAACTGTCGGTAGATCCGTTTTCGAAACCTTCGAAAATGTAGACAGCACAACCCATATTCACGAGATGCTAATGGCTTGTGCGGCAGTCCAGGTTGGTAATGACGATGGATTACCTTCTTTCATGTGTGAAAAGTGTGTCCAAAAGTTGCAAGCAGCATATTTCTTCAAGAAACAATGTGAAGCTAGTGATTCATCTCTTAGAGAATATGCCAAAACGATGAAAGAAAATGAAAATGATGTAAAACCATCAGTATCTGGTGAAGTGGATCAAAATAGTTATATTGAGAAATTCTTAATTGAAAATAGTGCAAAGCCTAAAGAAGGAGATTCAGATCCTAAGTCAGATTTTATTGAACTTTTGGACAATAATCAGATGGTACTAACATGCAGAGAATGTGGAAAAGTTTTCACTACCCTTGAAGGTCTTAGGTGCCATAAAAGACTTCACACTGGAGCACTTTTCAAATGCAAATATTGTGATAAGGAATATACCCGTCAAAATCATTTACAGAGACATGAAATGTCTCATAACAGAAGAAAAGTACATGTTTGTAGAATTTGCAGTAAAACACTTACCAGATTAGAACATTTGAAAAGACATCTCACCACACACTTGAAAGAAAAACCATTTTCTTGTACAAGATGTAAAAGAGGATTCAACAGATCTGAACATCTAGAGAACCATGTTGCTAGATGTAAAGGGGACAGAATTCACATATGTGAGATATGCAATAAAGGTTTCAATAGAGCAGACAGTTTGGAGGTGCATAAATTACTACATGAAAATCAAAAACCTGTCCTTCCTACTCTAGAAAATTTGGACAATATAGAAGATCATTATTTTGAAATTGATTATGATGACAATACTGCTTTCTCTGATGATAATTCAAATGAAGTTGATGAATGTTTCGAGCCACAGGTTGAAGTCACCGAAACTTTGGATGAAAAACTGAGTGATGAGATTTCTATGCAAGAACAAGAAAATAAACTTAAGGAGGAATATTCTGATGATATGAAGAGCGAAGATCTATTGGAAGGGGCAAATGGAGAAGATTCTATGAATCAGGATAACATATCTGATGAATATGGAAAAGAAAATGACAATGATAGCGGCGAATTGGATCAAATTTTGAAAGAGGAAAATCATTGTGAAATTGAAGATAGGGATAATGATACAGAAGAAGACTTTGATGAGAAACAGTCAATTCATGATGAAATAGTTGACCATGATGATCCAGTTTCTGATAGTGGAGGTTCTGAATATACGCCACCTACTAAACCGAAAAAAAGAGGCAGACCAAGAAAGCATCCTCCAAAGCTTAAATCATCCAGGGGGAGAAAATCTTCAGTAAAAAAAATCAAGAAGGAGGATGAAGAATATGGAGAATATTCTTGTTCCGAGTGTCAAGCAATATTCCCACTGATGTCTCTTCTAGAGAAACATGCTTCGGATTGGCATCCAGGACTAAAAGTATACAAGTGTGAAGAGTGCCAAAAAAGTTTCAGTCGTCCCAATCATTTGAAGCGCCATCTATTATCACATTCCGAAGACAAACCACATGTCTGTGAAATATGCACTAAATGTTTCAACCGCAAAGATCATCTCAATCAGCATTTGAAGTTACACTTGAAGTCGTCTGATGAAATATGCGATATTTGCTCTAAACCATTCCACCGAGCAGATCATCTTGCAAAACACAAGGCATCAAAACATGGCATTGGACAAAAGGTGACAGGTGACAAAAAATTTGATTGTGATATTTGTCAAAAATCTTTCACAACCGAGAAGTACAGAGATGTACATGTGAAAGGCCATCAGGGCATCAAAGAATATCCATGCAAAGTTTGTGATAAGACATTCCTGTCCAAATCTCATCTAAATGAGCATCAGAAGTTTCATAATGAACATTGCAAGAAATTCCTATGTTCTGAATGTGGCCAGAGGTTCATAAGAAATGATTATTTGGTTATACATATGCGGAGACATAGGGGGGAAAAACCTTTCAAGTGTAAATATTGTGGAAAAGGATTCCCTAGAACAACAGATTTGACAGTACATGAAAGATATCACACAGGAGAAAAAACTCATCTTTGTACAATTTGTGGAAGAGGATTTGGAAGGGCGTACAATTTAACAGTTCATATGAGAACACATACGGGTGAAAAACCTTATCAGTGTACTTATTGTGAAGCTGCCTTCGCCCAAGGAAATGATTTAAAGGCACATGTACGACGACACACTGGCGAAAGGTTCCAGTGTGAGCTATGCACCGAAAGCTTCCTTATGGGCTACTTACTTACGCAGCATAAGCGAACCGTTCATGGACTAAATGTGGTTAGTAATATTCGACGTCTTCAACCTATAAGCAAGTTGAACCCTGAAGATCCTAATGAACCCCCACCTATAACTATACCCCTACCAAAACCAGTAGTTCCTGAGAATTTATTGAATAACATGCAGGCACCTATGGCAACTTTAACACCTTTAGGGGCATTGTCGTTTGCCCAGATACAGCATCATATGGCTCCAGAATGA
- Protein Sequence
- MEEKPKYDFDRICRTCKCESTVGRSVFETFENVDSTTHIHEMLMACAAVQVGNDDGLPSFMCEKCVQKLQAAYFFKKQCEASDSSLREYAKTMKENENDVKPSVSGEVDQNSYIEKFLIENSAKPKEGDSDPKSDFIELLDNNQMVLTCRECGKVFTTLEGLRCHKRLHTGALFKCKYCDKEYTRQNHLQRHEMSHNRRKVHVCRICSKTLTRLEHLKRHLTTHLKEKPFSCTRCKRGFNRSEHLENHVARCKGDRIHICEICNKGFNRADSLEVHKLLHENQKPVLPTLENLDNIEDHYFEIDYDDNTAFSDDNSNEVDECFEPQVEVTETLDEKLSDEISMQEQENKLKEEYSDDMKSEDLLEGANGEDSMNQDNISDEYGKENDNDSGELDQILKEENHCEIEDRDNDTEEDFDEKQSIHDEIVDHDDPVSDSGGSEYTPPTKPKKRGRPRKHPPKLKSSRGRKSSVKKIKKEDEEYGEYSCSECQAIFPLMSLLEKHASDWHPGLKVYKCEECQKSFSRPNHLKRHLLSHSEDKPHVCEICTKCFNRKDHLNQHLKLHLKSSDEICDICSKPFHRADHLAKHKASKHGIGQKVTGDKKFDCDICQKSFTTEKYRDVHVKGHQGIKEYPCKVCDKTFLSKSHLNEHQKFHNEHCKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCEAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPISKLNPEDPNEPPPITIPLPKPVVPENLLNNMQAPMATLTPLGALSFAQIQHHMAPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00130725;
- 90% Identity
- -
- 80% Identity
- -