Arud022997.1
Basic Information
- Insect
- Aphaenogaster rudis
- Gene Symbol
- -
- Assembly
- GCA_003063815.1
- Location
- NJRL01000224.1:415899-426103[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-12 1.2e-09 38.2 0.0 1 39 310 349 310 353 0.90 2 4 8.3e-13 7.2e-10 38.8 0.1 2 39 365 402 364 405 0.94 3 4 1.2e-18 1e-15 57.5 0.0 1 45 419 464 419 464 0.97 4 4 2.2e-18 1.9e-15 56.7 0.1 1 42 471 513 471 514 0.97
Sequence Information
- Coding Sequence
- ATGTTGCTGGAAATTATTAATGCTGCATTTGCACTAAAGATAGCGAATGCGCGTTACACGCCAGGTTTTGGTGACTTAGAACGATTTCCGTTTCTTCCGCAGTCGCTCTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCACCACCCGTGAGTCTAAGCTCGCCGCCGAGGGAGTCCGGCACCCCGAGGTTGAACTACACGAAGCTGAAGAAGCACCACCAACGGTACAAGAGACCCAGAATCGAGCGGCCCACGTTCGAGCAGCGGGCCACCGATCCGAGACACTACGATCGCTACAAAGAGGAAGAGGCCAACAACGATTACAGCCGCGATAACAAAGAGAACCATCGAGACTGGCAAGCTGAAGATGAAGAGTGCACGGagacagcaacagcagcagtaGCACTGGAAACTTGCcagcgtaataataataacaataacaacaacaacggTAACGGCACGAGTAACAACGGTGACATGTTTTGTCACACAGGGCTAGGGCACTACGTCCACCATCCGGAACCCGGAGAGGTCGATTTGCCCCCCGAGACCCAACCCACTCCACCCAGCGCTACCCTGGTCGGCACCACCATTACCCATCTGAGGGATCCGGATCATCACACAGAAATTCAGAATTGCGATAGCGTCAAGATCAAGTTTGAGACGCTGCACACGATGGACTCCTCGGACACGATCGACATAGACAGCCACATGTCGGATCGGGCGAGCGTGAGCTCGAAGAACGCCGCCGATAGTGACAACATGATGATGATAACGCCGGAGTTGCTGGGACTGATGCCATCGGGAAGCTCCGGCCAGTCGGACTCGGGTGAGAACAATTCGAGAGGGCACAGCGGACAGTCCAGCTCGCATCATCACGGTTCGAAGTCGTGGACGCAGGAGGACATGGACGCGGCTTTAGAGGCGTTGAGAAATCACAACATGAGTCTAACAAAAGCTTCGGCAACATTCGGTATTCCCTCGACGACTCTATGGCAACGGGCGCATCGACTAGGCATCGACACACCGAAGAAGGATGGTCCCACGAAATCCTGGAGCGACGAGAGTTTGAACAACGCCTTAGAAGCATTGCGCACCGGCTCCATTTCTGCTAACAAGGCGTCCAAAGCATACGGAATACCTTCTAGTACGTTGTACAAGATCGCCAGGAGAGAAGGTATCAGATTGGCCGCGCCGTTCAATGCGAGTCCCACTACGTGGACGCCCGCCGATCTGGATCGTGCTCTGGAAGCAATAAGATCTGGTCAGACATCCGTGCAGAGAGCGTCGACGGAATTCGGTATACCTACGGGGACTCTGTATGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGCAGGAGCAATCCCACGCCGTGGAGCGAAGACGCTATGACTGAAGCTCTCGAGGCCGTCAGATTAGGGCACATGAGCATAAATCAAGCGGCGATCCATTACAATCTGCCGTATTCGTCACTGTACGGACGCTTCAAGAGAGGCAAATACGAGGAACCCGTCGTCGGCGACATCTCGCAGGACGGCACCAGTCCGCATTTCCATCAGAGCCCCAACCAGAATCACTCATCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
- Protein Sequence
- MLLEIINAAFALKIANARYTPGFGDLERFPFLPQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEQRATDPRHYDRYKEEEANNDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTSNNGDMFCHTGLGHYVHHPEPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00128877;
- 80% Identity
- iTF_00128877;