Apic020070.1
Basic Information
- Insect
- Aphaenogaster picea
- Gene Symbol
- -
- Assembly
- GCA_003063865.1
- Location
- NJRM01000190.1:424512-435049[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-12 1.5e-09 37.8 0.0 1 39 425 464 425 468 0.90 2 4 8.3e-13 9.3e-10 38.5 0.1 2 39 480 517 479 520 0.94 3 4 1.2e-18 1.4e-15 57.2 0.0 1 45 534 579 534 579 0.97 4 4 2.2e-18 2.5e-15 56.4 0.1 1 42 586 628 586 629 0.97
Sequence Information
- Coding Sequence
- ATGTTGCTGGAAATTATTAATGCTGCATTTGCACTAAAGCTCGAAGGAGGGGACAAGTGTCTCCTCGACAGCAGTTTTCTGAGACGCGAAGCGAATTTCGTCGTGGACGAGGCGCGTCTCGACGCGGAttgtcgtcgtcgcgacgctcgCCGAAACTGGATCGCCGGCGCAGATTTTCAGGAGCGACGTTTGGTGGGTGGACGAACGGTGCTCGACGTCGACGCCgacgccgcctccgccgccgccgccgacgtcgACGCCCGTCGCCGAGATGAAATTGCACCGCCGCCGGGCGGAACGAGATGCCGGGACGACGAGCTCTCGCCGCGCGAGAAATATGCAAATCCAATCGGACCGGACCCGCAGTCCTTCGTCCGCAAAGCGATAGCGAATGCGCGTTACACGCCAGGTTTTGGTGACTTAGAACGATTTCCGTTTCTTCCGCAGTCGCTCTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCACCACCCGTGAGTCTAAGCTCGCCGCCGAGGGAGTCCGGCACCCCGAGGTTGAACTACACGAAGCTGAAGAAGCACCACCAACGGTACAAGAGACCCAGAATCGAGCGGCCCACGTTCGAGCAGCGGGCCACCGATCCGAGACACTACGATCGCTACAAAGAGGAAGAGGCCAACAACGATTACAGCCGCGATAACAAAGAGAACCATCGAGACTGGCAAGCTGAAGATGAAGAGTGCACGGagacagcaacagcagcagtaGCACTGGAAACTTGCcagcgtaataataataacaataacaacaacaacggTAACGGCACGAGTAACAACGGTGACATGTTTTGTCACACAGGGCTAGGGCACTACGTCCACCATCCGGAACCCGGAGAGGTCGATTTGCCCCCCGAGACCCAACCCACTCCACCCAGCGCTACCCTGGTCGGCACCACCATTACCCATCTGAGGGATCCGGATCATCACACAGAAATTCAGAATTGCGATAGCGTCAAGATCAAGTTTGAGACGCTGCACACGATGGACTCCTCGGACACGATCGACATAGACAGCCACATGTCGGATCGGGCGAGCGTGAGCTCGAAGAACGCCGCCGATAGTGACAACATGATGATGATAACGCCGGAGTTGCTGGGACTGATGCCATCGGGAAGCTCCGGCCAGTCGGACTCGGGTGAGAACAATTCGAGAGGGCACAGCGGACAGTCCAGCTCGCATCATCACGGTTCGAAGTCGTGGACGCAGGAGGACATGGACGCGGCTTTAGAGGCGTTGAGAAATCACAACATGAGTCTAACAAAAGCTTCGGCAACATTCGGTATTCCCTCGACGACTCTATGGCAACGGGCGCATCGACTAGGCATCGACACACCGAAGAAGGATGGTCCCACGAAATCCTGGAGCGACGAGAGTTTGAACAACGCCTTAGAAGCATTGCGCACCGGCTCCATTTCGGCTAACAAGGCGTCCAAAGCATACGGAATACCTTCTAGTACGTTGTACAAGATCGCTAGGAGAGAAGGTATCAGATTGGCCGCGCCGTTCAATGCGAGTCCCACTACGTGGACGCCCGCCGATCTGGATCGTGCTCTGGAAGCAATAAGATCTGGTCAGACATCCGTGCAGAGAGCGTCGACGGAATTCGGTATACCTACGGGGACTCTGTATGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGCAGGAGCAATCCCACGCCGTGGAGCGAAGACGCTATGACTGAAGCTCTCGAGGCCGTCAGATTAGGGCACATGAGCATAAATCAAGCGGCGATCCATTACAATCTGCCGTATTCGTCACTGTACGGACGCTTCAAGAGAGGCAAATACGAGGAACCCGTCGTCGGCGACATCTCGCAGGACGGCACCAGTCCGCATTTCCATCAGAGCCCCAACCAGAATCACTCATCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
- Protein Sequence
- MLLEIINAAFALKLEGGDKCLLDSSFLRREANFVVDEARLDADCRRRDARRNWIAGADFQERRLVGGRTVLDVDADAASAAAADVDARRRDEIAPPPGGTRCRDDELSPREKYANPIGPDPQSFVRKAIANARYTPGFGDLERFPFLPQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEQRATDPRHYDRYKEEEANNDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTSNNGDMFCHTGLGHYVHHPEPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00127358;
- 90% Identity
- iTF_00129641; iTF_00126614; iTF_00127358;
- 80% Identity
- iTF_00129641;