Apic020667.1
Basic Information
- Insect
- Aphaenogaster picea
- Gene Symbol
- ZFX
- Assembly
- GCA_003063865.1
- Location
- NJRM01000059.1:1529-6660[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7 1.9e+02 3.3 0.1 3 23 15 35 14 35 0.94 2 15 3.3 3.7e+02 2.4 3.8 1 23 960 983 960 983 0.81 3 15 0.00013 0.015 16.2 1.9 3 23 1072 1093 1070 1093 0.96 4 15 0.0029 0.33 12.0 0.2 2 23 1106 1127 1106 1127 0.98 5 15 1.8e-05 0.0021 18.9 2.3 2 23 1130 1151 1129 1151 0.97 6 15 0.0023 0.26 12.3 0.3 1 23 1157 1179 1157 1179 0.96 7 15 4.4e-05 0.005 17.7 4.3 2 23 1186 1207 1185 1208 0.95 8 15 0.11 13 7.0 3.7 5 23 1221 1239 1220 1239 0.97 9 15 2.3e-05 0.0026 18.6 1.5 3 23 1246 1267 1245 1267 0.97 10 15 0.01 1.2 10.2 0.3 2 23 1283 1303 1282 1303 0.97 11 15 6.9e-05 0.0078 17.1 0.7 1 20 1309 1328 1309 1331 0.92 12 15 8.6e-05 0.0096 16.8 2.7 1 23 1339 1361 1339 1361 0.99 13 15 0.0024 0.27 12.2 3.2 1 23 1367 1389 1367 1389 0.97 14 15 4.3e-06 0.00049 20.9 3.9 1 23 1395 1417 1395 1417 0.99 15 15 0.0015 0.17 12.9 6.3 1 23 1423 1445 1423 1446 0.96
Sequence Information
- Coding Sequence
- ATGGAGCTCAACGGTGCGGGAACGCCCGTCGGGGCCGTGGCCTGTCCTGTGTGCACCCTGTATTTGCGCGAGGGCATCAGTCTGCAGAAGCATCTGGACACTCATCCCAAGGAACAGGTTATAGATGCTCTCATCAAAGCCAGCGCCTCCTCGTTACagtcgcagcagcagcagcaacagcaacaacagcagcagcagcaagctTTACCAGCATCAGCAGCAACGTCACTACCGTTATCATTGCAGCCGCAAGCTGCGCTTCAGACCCCTACCTCCATCCAGGCGCCCCAAGCGTCCACCCAAGTCTCGCAGAACACGCACATTTCTACTCACTCTCCATATCCCGTAGGACCCATCTTCGAATGTCCGCCCATAAACACCATGATGCCGCCGCAGTTCACCTCATTCAGCTATCAGCAATTCGTGAACAATGGGACCATGATGATACCGCAGTACGCGATGGCGCCACAAGCCAATCAGATGATGCAGATGCTGTACAATCCATACGGTATGTACCAACAGCAAATACCCACCGTCCAAATGATCTCACCAGTTGCAGCTATTCCTGGCGCGACGACGAGGGTGCGACCAGTGGTCACTATGGCTGGGGAGAGCAACGTCAGAACCCTGACGGTTCCTGTAAATAGTCCCGAGCCGAAGCAGATTCTGCCTGAGATTTTACCGGAGACGGAGCCCGAATCCGGCCAAGTTATACCGGATGTGAGCCTCTCAGTCTCGCCTGTACTACAAAATGAGGATACATCCGTCAGAGCAAGGGAGGAGAGCGCCAGCAGTGCGCTGCCAATTGATCATCGAGGACAACAGACACAGAGCTCTGCATCTCCTGGTGATAGCACGGTGCAGCATGAGTATAATGCTATTCCTAGATCTATTACAATTGCTTGCGCTATAGATAATACTGATGATAAAGTGGAGAGTGTATTGCCAGACATGATGGACGAGGAGCCATCAAGCAACATTTCGACGGACTTACAATGTAAATCTGTAACGTATGAGCAACCAGAAACACAACAGTTTACACAACAAGTTATCGACGAAGGATACGTAAGTGTATCCAATAGGAAAACACCCAATGGGATAGCTGAAATTGACTCCATGATTTGCGAGCGTGAATCGGAAGTGATAAGTGATGAAAGGCCCACAAGACGCAGCAGCAACGTTGCATCACCGCGGGATCTGATTGCAATAGACGCATTGAAAGATTCTGTCCAACCCGAGCTTAACTCGgtagaaaaattggaaaatttgatAACTATAATGGAGACGGAACTCAATAACGCTTCGCTTCAGGAAGAAAGTAATATACAAAACGATCAGGAGAGATTGGTGGACACGAAGGAGAAAACTACCGTAATAGATAGGGAGGAGAGCGTGATACACGATACAGTAGTCACGATCCCGGGCTCCCATGAAAAGGATCACATATTGCCCGACATACAGGAAGAGAACAAGTGGTGCTCGAGCAATTACGTAGCTAACGAACTGAGAACGCTAGAAAAAACTTGTAGTTTGTCATACAAAGTAGACTGCGCGAAAATAAATGAAGCACTGGAAAGATTGGAGAGACTGGAAAGAACTTTTCATTCGACTAATTATAAGTATAGTTTTTCAGCGCCCGCGTCCCCGGTCCCGAGAAGGAAGAACCGCAGGATCGTGCGTCGTTACAGCTCGCGATCGGAGCATGGATCGTGCGAAAATCTCAGCGCGTATCGTCATCGCGTCGGTTTCGACGCGGCCATGcatgaggacgacgacgacgatgacgacgacgacgatgatgacgaggaCGTGGACGAGGATGAGAAGATCGACGAGGAGGATAATTTCGATGAGGCGGACATGGAGATCGACGAGATCCCCAGTCCGCACACACCTTTCGCGGATTGCGGCGTCAGATCGCACACGCCGTTGTCCACGATCAGCGGCATTTCTGTATTAAGAGTTAGAAAGGATCTCAGCAAACCATGTTCACCCACGTCCATGCATTCGTTTCATCACGTGGACAGCGATAGCGTAACTCATGACGAGGACAGTAACGGCGTAGGTAACACCGCAGAGAAGGATCCAATCGACTGTTCTCAGGTGGAGGAGGAGAAAATCAAGACTGATCATCAGCAGCAGGAGACGCAGGTGGCGGTGTGCGGAAGTGTCGCAAAGGTTCAGGAATCGAGCAGTAGCTACGCGTACCATCAATCAGTGATAACCGAACACATTAGTTCATTCCCCGTGATACACTCGCAGTCGTCCGTCTTGATGCACGAGTCGTATTCCATTACGACGAGCACCAAGACGCAGAACCTCTTGAATCTCTCCGAGTCAATAAATCCCACAACCAGCACCGAATCCAGAAGCTTTCACTCTGCCAAGTCGTTGATGCCGAAGCAATCGATGGAACTGCTCAACATAAATGAAGATGCTCACGCCGGGCCAATGAATGTCTTTGAATTCGACGGACTGCAAATATTAGTTCCTAGTACGTTTATAAGTGACTCGTCCCAGAAAGCGGTGAGTGCGACCAGCCAGCAATCTATGGCGAGTAGCGAGGGTGCAATAGGTATCGACGAGGAGGTGAAGAGTATTAATATGCGTGCCGATGAGACCATGCCGCCTAGGGGCGAATTGTCGGAACAAGAGAGTAATGGATGCACGGAGCAGTCTGCATGGCAGTTGTACATGGGTCAAGAATCTTCGCGCATGTCCACCTCTTACGATCTGTTGGCTCGAGAAAGCTGGGAAGAATCAGAAGGATCTGACAACGAGATCAGCGGACCGTTGTTGGATAGTAGATCGTTGGCCACGCACTTTACTTCGAGTCTGTTTCTGGATCGGGACCGAAAGACACCGACTAAACGAACATTCAAGTGTTCCCACTGTAGCGAAGTGTTTGATTGTCCAAAGGAGCGTAGAGTTCATAGCACAACGGTGCACAAGGATGCGATGCCCAGTAGCAGTAGAGATCAGTTGGATCAGCCAGAAGTAAAGGACATCAAGTTGCTGGACAGTCGCATGAATATGTTTGACGATATATTCATGCCGAGTATACACATGCAACAACACATGTACCATCATCAGCAGCCGCTCTTGCACCAGTTGCAGCCACCGTCGCAGCCTGGATCGGATGGCCTGACAAAGGCCGAGGCCGACCAGAAAATCGGCGAGAATCTAGTAATACCGTCGAACATCGAGGTGATCTGTACCATATGCAATCAGCGATTCAATAGCGAGAAATCCCTACAGGCGCATCACCGGCGCATGCATATCGCCGACGTGAACAAACGCATACGCGAGACCGCAAAGTGTCAGATATGCAATGAGGAATTTCCATCGGTATTCCTATTTAATGCTCATCTGAAGATACACCCGTTAGAGTGCGGACAGTGCGGCAAGTATTTCTACCGGAAGCAGAACTTCAAGCTCCACATGAAACGTCACCTGGGCATCAAGCCGTTCCCGTGTACCGTGTGCGACAAGGCATTCCTTACCAAGCAGAAACTGGAGGAGCACACCAACGGCCACACCGGCAACGCGCCCGTCAGGTGTAGTTTGTGCAATGAGACCTTCCGTAGATATTCGAATCTGACACAGCACAAAAACAGACATCATCTCAACATCAAGAAGAAGCTCAAGGATTACATATGCCACTGTGGCGAGGTGTTTCACACGAAGAAGAAGCTCGCCTGGCACAAAGAGACTCACGACGAGAAGCCCAAGGCGTGCACGTACTGCAACGAGCGATTTATCCACATGGCCAGCCTGACGCGTCACATGCGTCGCGCCCACAATCGCCGCTTCGTTCCCGACGCTCAGCGCGAGAGCGAGAATGTCGAGTGCCCGATCTGCAAGTGTATCTACCTGCGATCGTCGCTAGCGGTGCATATGCGCGTGCACAACGGCGAGCGGCCGTACGAGTGTCAGGTCTGCTCCAAGGCGTTCAGCACCAAATGGAACCTGCAGCTGCACAAGTGGACACACGCGGCGCGCAGTACCAAGCCCTTCAAATGTAATCAGTGCAGCGCGGCGTTCTACCGTCACAGCGATTACACGGCGCACATGAATTCCCATCGGAACGTGCGGCCGTACACGTGCAACTactgcggcgcgcagttcatcCGCAAGTACAACTGCCTGCGGCACGTGAAGGAGCACGAAGAGAACAAGGCATACACGTGCGACGTGTGCAATAAGACCTTCCACCGCTCGTACTATCTCAAGGAGCACCTGCGGGTGCACTCGGGCGCGCGGCCGTACACGTGTCACATCTGCGGCAAGTCCAGCGGCACCAAATCCAATCACAACAAGCACGTGCGAATCCATCACGCGCGCGAGCCTGTAAATACCGAGAATTGA
- Protein Sequence
- MELNGAGTPVGAVACPVCTLYLREGISLQKHLDTHPKEQVIDALIKASASSLQSQQQQQQQQQQQQQALPASAATSLPLSLQPQAALQTPTSIQAPQASTQVSQNTHISTHSPYPVGPIFECPPINTMMPPQFTSFSYQQFVNNGTMMIPQYAMAPQANQMMQMLYNPYGMYQQQIPTVQMISPVAAIPGATTRVRPVVTMAGESNVRTLTVPVNSPEPKQILPEILPETEPESGQVIPDVSLSVSPVLQNEDTSVRAREESASSALPIDHRGQQTQSSASPGDSTVQHEYNAIPRSITIACAIDNTDDKVESVLPDMMDEEPSSNISTDLQCKSVTYEQPETQQFTQQVIDEGYVSVSNRKTPNGIAEIDSMICERESEVISDERPTRRSSNVASPRDLIAIDALKDSVQPELNSVEKLENLITIMETELNNASLQEESNIQNDQERLVDTKEKTTVIDREESVIHDTVVTIPGSHEKDHILPDIQEENKWCSSNYVANELRTLEKTCSLSYKVDCAKINEALERLERLERTFHSTNYKYSFSAPASPVPRRKNRRIVRRYSSRSEHGSCENLSAYRHRVGFDAAMHEDDDDDDDDDDDDEDVDEDEKIDEEDNFDEADMEIDEIPSPHTPFADCGVRSHTPLSTISGISVLRVRKDLSKPCSPTSMHSFHHVDSDSVTHDEDSNGVGNTAEKDPIDCSQVEEEKIKTDHQQQETQVAVCGSVAKVQESSSSYAYHQSVITEHISSFPVIHSQSSVLMHESYSITTSTKTQNLLNLSESINPTTSTESRSFHSAKSLMPKQSMELLNINEDAHAGPMNVFEFDGLQILVPSTFISDSSQKAVSATSQQSMASSEGAIGIDEEVKSINMRADETMPPRGELSEQESNGCTEQSAWQLYMGQESSRMSTSYDLLARESWEESEGSDNEISGPLLDSRSLATHFTSSLFLDRDRKTPTKRTFKCSHCSEVFDCPKERRVHSTTVHKDAMPSSSRDQLDQPEVKDIKLLDSRMNMFDDIFMPSIHMQQHMYHHQQPLLHQLQPPSQPGSDGLTKAEADQKIGENLVIPSNIEVICTICNQRFNSEKSLQAHHRRMHIADVNKRIRETAKCQICNEEFPSVFLFNAHLKIHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLEEHTNGHTGNAPVRCSLCNETFRRYSNLTQHKNRHHLNIKKKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSGTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01523563;
- 90% Identity
- iTF_00128452;
- 80% Identity
- iTF_00129958;